View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9003_low_13 (Length: 521)
Name: NF9003_low_13
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 11 - 502
Target Start/End: Original strand, 37842526 - 37843019
Alignment:
| Q |
11 |
gaagcagagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttatt |
110 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842526 |
gaagcatagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttatt |
37842625 |
T |
|
| Q |
111 |
gaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgt--ctccaaatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37842626 |
gaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgtgtctccaaatca |
37842725 |
T |
|
| Q |
209 |
accgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataattagaaggcgtt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37842726 |
accgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataattcaaaggcgtt |
37842825 |
T |
|
| Q |
309 |
tccttagaaaggaatcagatacggaagatctaaagcaatggtatattggtaggggagctggattgattggaaccagatatgcttacgaattcaacgtatc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842826 |
tccttagaaaggaatcagatacggaagatctaaagcaatggtatattggtaggggagctggattgattggaaccagatatgcttacgaattcaacgtatc |
37842925 |
T |
|
| Q |
409 |
aggtgaagataaaccacctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggt |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37842926 |
aggtgaagataaaccacctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggt |
37843019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 33 - 298
Target Start/End: Original strand, 28089418 - 28089684
Alignment:
| Q |
33 |
tcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccatcatcattc |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
28089418 |
tcttgtttcattaattgaggtcaatatttcttacaatctcttcaatggttttgtaccattagctctaatgagtttattgaattcctcaccatcatcattc |
28089517 |
T |
|
| Q |
133 |
atgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatcca--tgtctccaaatcaaccgatcacaaaggtatcagta |
230 |
Q |
| |
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||||| ||||||||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||| ||| |
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|
| T |
28089518 |
atgggcaatcctctcatatgttttagttgttgaa-ttgcattaaaactagttatgtaaatccatgtgtctacaaatcaaccgatcataaagttatcggta |
28089616 |
T |
|
| Q |
231 |
atgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataatt |
298 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||| ||||||||| |
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|
| T |
28089617 |
atgttcaaattgtgatgatagaacttggatcctcaatattgatttctgatgtgctggtgataataatt |
28089684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 37836907 - 37837193
Alignment:
| Q |
11 |
gaagcagagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttatt |
110 |
Q |
| |
|
|||||| ||| || |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
37836907 |
gaagcatagatgctcttggaggtcttgtttcattaattgaggtcaatatttctttcaatctcttcaatggatctgtaccaacaggtctaatgaggttatt |
37837006 |
T |
|
| Q |
111 |
gaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatcca--tgtctccaaatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||| |||||||| | |||||||| ||||||| ||||||||||| ||||| ||||||| |
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|
| T |
37837007 |
gaattcctcaccatcatcattcatgggtaatcctttcctatgtgtaagttgtttgaattgcattataactagtaatgtaaatccatgtgtctacaaatca |
37837106 |
T |
|
| Q |
209 |
accgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataata |
295 |
Q |
| |
|
|| ||||| |||||||||||| ||||||||||||| ||||| | | |||||||||| ||||||||||||| |||| |||| |||||| |
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|
| T |
37837107 |
actgatcataaaggtatcagttatgttcaaattgtaatgatagtacttggatcctcaatattgatttctgctgtgatggtgataata |
37837193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 37831217 - 37831472
Alignment:
| Q |
25 |
cttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattgaattcctcaccat |
124 |
Q |
| |
|
|||| |||||||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
37831217 |
cttgaaagtcttgtttcgttaactgatatcaatgtttcttacaatctcttcaatggttctgtaccaacaggtctaatgaagttactgaattcctcaccat |
37831316 |
T |
|
| Q |
125 |
catcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatcca--tgtctccaaatcaaccgatcacaaagg |
222 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||| ||||| ||| ||||| ||||||||||| |
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|
| T |
37831317 |
catcattcatgggtagtcctctcctatgtgttagttgtttgagttgcattgaaactagttatgtaaatccatgtgtctacaagtcaactgatcacaaagg |
37831416 |
T |
|
| Q |
223 |
tatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctg |
278 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| |||||||||| ||||| ||||||| |
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|
| T |
37831417 |
tatcggtaatgttcaaattgtgttgatagaacttggatcctcaatatttatttctg |
37831472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 37850286 - 37850428
Alignment:
| Q |
11 |
gaagcagagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttatt |
110 |
Q |
| |
|
|||||| ||| || ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||| |
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|
| T |
37850286 |
gaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatgaatttatt |
37850385 |
T |
|
| Q |
111 |
gaattcctcaccatcatcattcatgggtaatcctctcatatgt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37850386 |
gaattcctcaccatcatcattcatgggtaatcctctcctatgt |
37850428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 502
Target Start/End: Original strand, 37837332 - 37837394
Alignment:
| Q |
440 |
ctagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggt |
502 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
37837332 |
ctagttttggaggctacagagaacctaaatgatcagtatattattggaagaggagcacatggt |
37837394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 499
Target Start/End: Original strand, 37844814 - 37844883
Alignment:
| Q |
430 |
ccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacat |
499 |
Q |
| |
|
||||||| | ||||| ||| |||||||||||||||||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
37844814 |
ccttcaggacctagttttggaggctacagagaacctaaatgatcactatattattggcaggggagcacat |
37844883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 502
Target Start/End: Original strand, 37850657 - 37850734
Alignment:
| Q |
425 |
cctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggt |
502 |
Q |
| |
|
||||||||||| || | ||||||| ||||||| |||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
37850657 |
cctgaccttcataagcaagtgttggaggctactgagaacctaaatgatcggtatattattggtggaggagcacatggt |
37850734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 36865654 - 36865943
Alignment:
| Q |
11 |
gaagcagagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttatt |
110 |
Q |
| |
|
|||||| ||| || |||| | |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||| | |||||| |
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|
| T |
36865654 |
gaagcatagatgctcttgaaggtcttgtttcattaattgaggtcaatatttattacaatcttttcaatggttctgtaccaacacgtctaattaggttatt |
36865753 |
T |
|
| Q |
111 |
gaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatg--tctccaaatca |
208 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| ||||||| || ||||| | |||| |||||||||||| | |||||||||| ||| |||| || |
|
|
| T |
36865754 |
gaattcctcaccgtcatcgttcatgggtaatcctctcctatgtgttagatgtttgaattgctttaaaactagttttataaatccatgtatctacaaacca |
36865853 |
T |
|
| Q |
209 |
accgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataatt |
298 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||| ||| ||||| |||| ||||| |||||| |||| ||| ||||||||| |
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|
| T |
36865854 |
actgatcacaaaggtatcattaatgttcaaattgtgatgatagaacttggaccctcaatatttgtttctggtgtggcggtgataataatt |
36865943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 486
Target Start/End: Original strand, 36866019 - 36866080
Alignment:
| Q |
425 |
cctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattgg |
486 |
Q |
| |
|
||||||||||| | | ||||||| | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
36866019 |
cctgaccttcatgatcaagtgttggaagctacagagaacctaaatgatcaatatattattgg |
36866080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 501
Target Start/End: Original strand, 45561900 - 45561951
Alignment:
| Q |
450 |
aggctacagagaacctaagtgatcaatatattattggaagaggagcacatgg |
501 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
45561900 |
aggctacatcgaacctaagtgatcggtatattattggaagaggagcccatgg |
45561951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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