View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9003_low_15 (Length: 494)

Name: NF9003_low_15
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9003_low_15
NF9003_low_15
[»] chr6 (2 HSPs)
chr6 (1-477)||(33693735-33694209)
chr6 (128-238)||(1127198-1127309)
[»] chr8 (6 HSPs)
chr8 (129-240)||(2689089-2689200)
chr8 (128-237)||(20693744-20693854)
chr8 (128-240)||(2687684-2687797)
chr8 (140-236)||(25479451-25479548)
chr8 (133-237)||(14130110-14130215)
chr8 (133-237)||(24730977-24731082)
[»] chr4 (2 HSPs)
chr4 (128-240)||(10494845-10494958)
chr4 (133-237)||(13991418-13991523)
[»] chr1 (2 HSPs)
chr1 (133-237)||(12944061-12944166)
chr1 (145-237)||(10925685-10925778)
[»] chr7 (5 HSPs)
chr7 (251-377)||(1785556-1785678)
chr7 (128-237)||(1369750-1369860)
chr7 (128-237)||(24840088-24840198)
chr7 (128-237)||(27142611-27142721)
chr7 (133-233)||(6451789-6451890)
[»] chr2 (3 HSPs)
chr2 (128-237)||(23457591-23457701)
chr2 (118-220)||(23456537-23456640)
chr2 (133-238)||(5171624-5171730)


Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 33693735 - 33694209
Alignment:
Q  1 cttttaagttttgtggaatgttggcccaactcaaccgcttgggacccacagaaggatgaggaagagtgagctaatataacctttgtcagacactagacgc 100  Q
    ||||| |||||||||||||| |||||||| ||||||| ||| |||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| |||    
T  33693735 cttttcagttttgtggaatggtggcccaaatcaaccg-ttgtgacccacagaagtatgagaaagagtgatctaatataacctttgtcggacactaggcgc 33693833  T
Q  101 agtcgaaagcggaggccgacaaatgcaaaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatccacggaatt 200  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||| |    
T  33693834 agtcgaaagcggaggctaacaaatgcaaaacatagattgaaaagaaacaaatttgcaagcaacaaacctgtgaaaatatagttc-ggaatccacggaact 33693932  T
Q  201 tgataaaactctttgaaataatattgaatgaataaaaactacctctcaggtacaactcaagtgtttaaatattagtgaaaccctaatgggttgaaaattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33693933 tgataaaactctttgaaataatattgaatgaataaaaactacctctcaaatacaactcaagtgtttaaatattagtgaaaccctaatgggctgaaaattc 33694032  T
Q  301 aaaacagaaataataaagtgcaaattattcaaattggactgaaataattatactaaggaaaccctcttaaatcagttgatttattgaattgaaaagtgtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33694033 aaaacagaaataataaagtgcaaattattcaaattggactgaaataattatactaaggaaaccctcttaaaccagttgatttattgaattgaaaagtgtt 33694132  T
Q  401 tcattgttgttttccccttgttgattgttgatttatcaagtattaaagaattatgttggtgtttggttgcaactaac 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33694133 tcattgttgttttccccttgttgattgttgatttatcaagtattaaagaattttgttggtgtttggttgcaactaac 33694209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 1127309 - 1127198
Alignment:
Q  128 aaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatccacggaat-ttgataaaactctttgaaataatattg 226  Q
    |||| |||||| ||||||||||| |||| |||| |||||| ||| ||||||  ||| |||||| |||  ||  |||| |||||||| | |||||||||||    
T  1127309 aaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaaatagtgtttcggaatacaccaaaaattgagaaaactctctaaaataatattg 1127210  T
Q  227 aatgaataaaaa 238  Q
    ||||||||||||    
T  1127209 aatgaataaaaa 1127198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 2689200 - 2689089
Alignment:
Q  129 aacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatccacggaatttgataaaactctttgaaataatattgaa 228  Q
    |||| ||||||||||||||||| |||| |||| ||||| |||| ||||||  ||||||| |||||| ||| |||| |||||||| ||||||  |||||||    
T  2689200 aacaaagattgaaaagaaacaagtttgcaagcgacaaaactgtgaaaatagggttccggcatccacagaaattgagaaaactctctgaaattttattgaa 2689101  T
Q  229 tgaataaaaact 240  Q
     |||||||||||    
T  2689100 agaataaaaact 2689089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 20693854 - 20693744
Alignment:
Q  128 aaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttgaaataatattg 226  Q
    |||| ||||||||||| |||||| |||| |||| |||||| ||| ||||||| ||||||||||||| | ||| |||| |||||||| | || || |||||    
T  20693854 aaacctagattgaaaataaacaagtttgcaagcgacaaatttgtgaaaatatggttccggaatccatcagaaattgagaaaactctctaaagtattattg 20693755  T
Q  227 aatgaataaaa 237  Q
    ||  |||||||    
T  20693754 aagtaataaaa 20693744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 2687797 - 2687684
Alignment:
Q  128 aaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatccacg-gaatttgataaaactctttgaaataatattg 226  Q
    |||| ||||| |||||  ||||| |||| |||| |||||  ||| ||||||  ||||  ||||||||  ||| |||| |||||||||||||||| |||||    
T  2687797 aaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttctagaatccacaagaaattgagaaaactctttgaaatattattg 2687698  T
Q  227 aatgaataaaaact 240  Q
    ||||||||||||||    
T  2687697 aatgaataaaaact 2687684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 25479451 - 25479548
Alignment:
Q  140 aaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatccacg-gaatttgataaaactctttgaaataatattgaatgaataaa 236  Q
    |||||||||||  ||| |||  |||||||| | ||||||  ||||||||||||||  |||||||| |||||||| ||||||  |||||||||||||||    
T  25479451 aaaagaaacaaggttgcaagtgacaaatctttgaaaataaggttccggaatccaccagaatttgagaaaactctctgaaattttattgaatgaataaa 25479548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 14130215 - 14130110
Alignment:
Q  133 tagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttgaaataatattgaatga 231  Q
    ||||| ||||||| |||| |||| |||| | |||| ||| ||||||  ||||||||||||| | ||| |||| ||||||||   ||||| ||||||||||    
T  14130215 tagatcgaaaagagacaagtttgcaagcgataaatttgtgaaaataaggttccggaatccaccagaaattgagaaaactctccaaaatattattgaatga 14130116  T
Q  232 ataaaa 237  Q
    ||||||    
T  14130115 ataaaa 14130110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 24731082 - 24730977
Alignment:
Q  133 tagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttgaaataatattgaatga 231  Q
    |||||||||||| ||||| |||| ||||||||||  ||| ||||||   || ||||||||| |  || |||| |||||||| | ||||| ||||||||||    
T  24731082 tagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaataggatttcggaatccatcaaaaattgagaaaactctctaaaatattattgaatga 24730983  T
Q  232 ataaaa 237  Q
    ||||||    
T  24730982 ataaaa 24730977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 10494958 - 10494845
Alignment:
Q  128 aaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttgaaataatattg 226  Q
    |||| ||||| |||||||||||| |||| |||  ||||| |||| |||||| ||||||||||| || | ||| |||| |||||||| | ||||| |||||    
T  10494958 aaacctagatggaaaagaaacaagtttgcaagtgacaaacctgtgaaaatagagttccggaattcaccagaaattgagaaaactctctaaaatattattg 10494859  T
Q  227 aatgaataaaaact 240  Q
    ||||||||||||||    
T  10494858 aatgaataaaaact 10494845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 13991418 - 13991523
Alignment:
Q  133 tagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatccacg-gaatttgataaaactctttgaaataatattgaatga 231  Q
    |||||||||||||||||| |||| |||| |||||  ||  ||||||  |||| |||||||||  |||||||| |||||||| | ||||| ||||||||||    
T  13991418 tagattgaaaagaaacaagtttgcaagcgacaaacatgcgaaaataaggttctggaatccaccagaatttgagaaaactctctaaaatattattgaatga 13991517  T
Q  232 ataaaa 237  Q
    ||||||    
T  13991518 ataaaa 13991523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 12944166 - 12944061
Alignment:
Q  133 tagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatccacg-gaatttgataaaactctttgaaataatattgaatga 231  Q
    |||||||||||||||||| |||| || | |||||  ||||||||||  |||| |||||||||  ||| |||| |||||||| | ||||||||||||||||    
T  12944166 tagattgaaaagaaacaagtttgcaaacgacaaacttgtaaaaatagggttctggaatccaccagaaattgagaaaactctctaaaataatattgaatga 12944067  T
Q  232 ataaaa 237  Q
    ||||||    
T  12944066 ataaaa 12944061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 10925778 - 10925685
Alignment:
Q  145 aaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatccacggaat-ttgataaaactctttgaaataatattgaatgaataaaa 237  Q
    |||||| |||| |||| |||||  ||||||||||| |||| ||||||||| |||  |||| |||||||| | ||||| ||||||||||||||||    
T  10925778 aaacaattttgcaagcgacaaacttgtaaaaatatggttctggaatccaccgaaaattgaaaaaactctctaaaatattattgaatgaataaaa 10925685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 1785556 - 1785678
Alignment:
Q  251 tacaactcaagtgtttaaatattagtgaaaccctaatgggttgaaaattcaaaacagaaataataaagtgcaaattattcaaattggactgaaataatta 350  Q
    ||||||| ||||||||||||| ||  ||||| ||||| ||  |||||||||||| ||||  |||||| |  |||||||| ||||| | |||||||||| |    
T  1785556 tacaactgaagtgtttaaatactaaagaaactctaattggccgaaaattcaaaatagaa--aataaaat--aaattattaaaattaggctgaaataataa 1785651  T
Q  351 tactaaggaaaccctcttaaatcagtt 377  Q
    |||||| ||||||||| || |||||||    
T  1785652 tactaaagaaaccctcatacatcagtt 1785678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 1369860 - 1369750
Alignment:
Q  128 aaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttgaaataatattg 226  Q
    |||| |||||||||||||||||| |||| |||| | |||  ||| ||||||  ||||||||||||| | ||| |||| |||||||| | ||||| |||||    
T  1369860 aaacctagattgaaaagaaacaagtttgcaagcgataaacttgttaaaatagggttccggaatccaccagaaattgagaaaactctataaaatattattg 1369761  T
Q  227 aatgaataaaa 237  Q
    ||| |||||||    
T  1369760 aattaataaaa 1369750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 24840198 - 24840088
Alignment:
Q  128 aaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttgaaataatattg 226  Q
    |||| |||||||||||||||||| |||| |||| |||||  ||| ||||||  ||||||||||||| | ||| |||| |||||||| | ||||| ||||     
T  24840198 aaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaactctctaaaatattattc 24840099  T
Q  227 aatgaataaaa 237  Q
    ||| |||||||    
T  24840098 aataaataaaa 24840088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 27142721 - 27142611
Alignment:
Q  128 aaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttgaaataatattg 226  Q
    |||| |||||||||||||||||| |||| |||| |||||  ||| ||||||  ||||| ||| ||| | ||| |||| |||||||| ||||||| ||||     
T  27142721 aaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcctgaaaccaccagaaattgagaaaactctctgaaatattattc 27142622  T
Q  227 aatgaataaaa 237  Q
    ||| |||||||    
T  27142621 aattaataaaa 27142611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 6451789 - 6451890
Alignment:
Q  133 tagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttgaaataatattgaatga 231  Q
    |||||||||| ||||||| |||| |||| ||||| |||| ||||||  ||| ||||||||| |  || |||| |||||||| | ||||| ||||||||||    
T  6451789 tagattgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtttcggaatccaacaaaaattgaaaaaactctctaaaatattattgaatga 6451888  T
Q  232 at 233  Q
    ||    
T  6451889 at 6451890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 23457701 - 23457591
Alignment:
Q  128 aaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttgaaataatattg 226  Q
    |||| ||||||||||| |||||| |||| |||| |||||  ||| ||||||  ||||||||||||| |  || |||| |||||||| | ||||| |||||    
T  23457701 aaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccaaaaattgagaaaactctctaaaatattattg 23457602  T
Q  227 aatgaataaaa 237  Q
    |||||||||||    
T  23457601 aatgaataaaa 23457591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 23456640 - 23456537
Alignment:
Q  118 gacaaatgcaaaacatagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatcca-cggaatttgataaaactctttga 216  Q
    ||||||||  |||| || ||||||||||||||| |||| |||| |||||  | | |||||| ||||| |||||||| |||||  ||| ||||||||||||    
T  23456640 gacaaatgttaaacctatattgaaaagaaacaagtttgcaagcgacaaacttttgaaaataaagttctggaatccaccggaaactgagaaaactctttga 23456541  T
Q  217 aata 220  Q
    ||||    
T  23456540 aata 23456537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 5171624 - 5171730
Alignment:
Q  133 tagattgaaaagaaacaaatttgtaagcaacaaatctgtaaaaatatagttccggaatccac-ggaatttgataaaactctttgaaataatattgaatga 231  Q
    ||||||||||||| |||| |||| |||| |||||  ||||||||||  ||||  ||||||||  ||| |||| |||||||| | ||||| |||| |||||    
T  5171624 tagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattgagaaaactctctaaaatattatttaatga 5171723  T
Q  232 ataaaaa 238  Q
    |||||||    
T  5171724 ataaaaa 5171730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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