View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9003_low_17 (Length: 463)

Name: NF9003_low_17
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9003_low_17
NF9003_low_17
[»] chr1 (2 HSPs)
chr1 (1-445)||(52422252-52422697)
chr1 (277-444)||(42714516-42714683)
[»] chr2 (1 HSPs)
chr2 (344-408)||(40377534-40377598)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 52422697 - 52422252
Alignment:
Q  1 agagaatataagcaatacgaaaagaaattaatacttgcatgcaagaatacctaagacatatgtgacacaaactcctgattacctaactgaactaaaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52422697 agagaatataagcaatacgaaaagaaattaatacttgcatgcaagaatacctaagacatacgtgacacaaactcctgattacctaactgaactaaaatta 52422598  T
Q  101 ctacacataaaacccaaacttgtttaccaaaagaagtaaaattctttnnnnnnnn-cctaagatgcgacactagataaagagacgagagagaaatatcca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         ||||||| ||||||||||||||||||||||||||||||||||||    
T  52422597 ctacacataaaacccaaacttgtttaccaaaagaagtaaaattctttaaaaaaaaacctaagacgcgacactagataaagagacgagagagaaatatcca 52422498  T
Q  200 taacttggatcattctcccttcacatgtattccaaggcaagaataccagaattcttattatccttgcgtctcatcactctcatttcaaggatcttcttat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52422497 taacttggatcattctcccttcacatgtattccaaggcaagaataccagaattcttattatccttgcgtctcatcactctcatttcaaggatcttcttat 52422398  T
Q  300 gtgagttagagtgaagatccggagaaaaagttgagctagccgcaggccggtattcagggcagagtcggcctgacttgtaccgaacaccgcaagcattgca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52422397 gtgagttagagtgaagatccggagaaaaagttgagctagccgcaggccggtattcagggcagagtcggcctgacttgtaccgaacaccgcaagcattgca 52422298  T
Q  400 gagtgttttcggcccctctggccctgtcctccattgtggagtcttc 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  52422297 gagtgttttcggcccctctggccctgtcctccattgtggagtcttc 52422252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 277 - 444
Target Start/End: Complemental strand, 42714683 - 42714516
Alignment:
Q  277 tctcatttcaaggatcttcttatgtgagttagagtgaagatccggagaaaaagttgagctagccgcaggccggtattcagggcagagtcggcctgacttg 376  Q
    |||||||||||||| ||| || || || || ||||| | | | ||| |||| ||||  ||||| |||||||||||||||||| | |||||||| ||||||    
T  42714683 tctcatttcaaggacctttttgtgcgaattggagtgcacagctggacaaaacgttggactagcagcaggccggtattcagggaaaagtcggccagacttg 42714584  T
Q  377 taccgaacaccgcaagcattgcagagtgttttcggcccctctggccctgtcctccattgtggagtctt 444  Q
    |||||||||||||||||||||||||||||||| ||||||  ||| |||| ||||||||||||||||||    
T  42714583 taccgaacaccgcaagcattgcagagtgtttttggccccattggacctgccctccattgtggagtctt 42714516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 40377534 - 40377598
Alignment:
Q  344 ggccggtattcagggcagagtcggcctgacttgtaccgaacaccgcaagcattgcagagtgtttt 408  Q
    ||||||||||||||  |||| ||||| ||| ||||||||||||| |||||||||||||| |||||    
T  40377534 ggccggtattcaggatagaggcggccggacctgtaccgaacaccacaagcattgcagagcgtttt 40377598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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