View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9003_low_18 (Length: 460)

Name: NF9003_low_18
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9003_low_18
NF9003_low_18
[»] chr5 (22 HSPs)
chr5 (1-442)||(14144323-14144766)
chr5 (1-114)||(42910708-42910821)
chr5 (6-65)||(17625642-17625700)
chr5 (6-63)||(18033437-18033494)
chr5 (1-69)||(1098703-1098771)
chr5 (6-66)||(13356216-13356276)
chr5 (8-114)||(13654540-13654645)
chr5 (6-66)||(25792925-25792985)
chr5 (36-99)||(2673893-2673956)
chr5 (6-69)||(10437713-10437776)
chr5 (6-64)||(71260-71318)
chr5 (10-64)||(13391536-13391590)
chr5 (14-64)||(15311939-15311989)
chr5 (34-116)||(19216315-19216397)
chr5 (12-69)||(3100412-3100469)
chr5 (33-66)||(24433563-24433596)
chr5 (1-66)||(42910791-42910856)
chr5 (6-66)||(13654510-13654570)
chr5 (1-69)||(22227057-22227125)
chr5 (6-66)||(23914842-23914902)
chr5 (6-66)||(26300112-26300172)
chr5 (34-66)||(36409667-36409699)
[»] chr3 (24 HSPs)
chr3 (1-95)||(39964291-39964385)
chr3 (11-117)||(39682615-39682721)
chr3 (6-65)||(21217167-21217226)
chr3 (11-69)||(10841773-10841831)
chr3 (5-66)||(8256827-8256888)
chr3 (6-66)||(331800-331859)
chr3 (9-69)||(334741-334801)
chr3 (6-66)||(27224581-27224641)
chr3 (9-69)||(36571379-36571439)
chr3 (7-66)||(105374-105433)
chr3 (10-69)||(21217242-21217301)
chr3 (1-68)||(36566712-36566779)
chr3 (6-68)||(4190630-4190692)
chr3 (28-69)||(43906746-43906787)
chr3 (9-66)||(50603592-50603649)
chr3 (9-66)||(54595794-54595851)
chr3 (6-70)||(7882282-7882346)
chr3 (34-114)||(32711237-32711317)
chr3 (36-72)||(45010827-45010863)
chr3 (6-94)||(48191716-48191804)
chr3 (6-66)||(51239322-51239382)
chr3 (6-66)||(52168284-52168344)
chr3 (6-66)||(52215959-52216019)
chr3 (6-66)||(52931752-52931812)
[»] chr4 (41 HSPs)
chr4 (32-117)||(31089914-31089999)
chr4 (6-117)||(19934639-19934750)
chr4 (6-117)||(54164814-54164925)
chr4 (6-66)||(54164892-54164952)
chr4 (7-66)||(29006837-29006896)
chr4 (7-93)||(4406243-4406329)
chr4 (7-69)||(16170986-16171048)
chr4 (6-72)||(38381977-38382043)
chr4 (6-66)||(19934717-19934777)
chr4 (1-92)||(31933643-31933734)
chr4 (1-64)||(56257416-56257479)
chr4 (6-65)||(56364406-56364465)
chr4 (13-67)||(11796662-11796716)
chr4 (33-69)||(9600002-9600038)
chr4 (6-118)||(27587251-27587363)
chr4 (6-66)||(29006914-29006974)
chr4 (34-114)||(46462409-46462489)
chr4 (1-69)||(46518496-46518564)
chr4 (6-49)||(16468300-16468343)
chr4 (34-69)||(19936569-19936604)
chr4 (6-100)||(21790151-21790244)
chr4 (1-72)||(22020112-22020183)
chr4 (12-67)||(26636518-26636573)
chr4 (6-65)||(39160894-39160953)
chr4 (6-65)||(47181560-47181619)
chr4 (12-63)||(53410915-53410966)
chr4 (11-69)||(6087509-6087567)
chr4 (1-78)||(22235327-22235404)
chr4 (7-69)||(52281120-52281182)
chr4 (1-71)||(52673594-52673664)
chr4 (7-64)||(1829628-1829685)
chr4 (36-109)||(5535745-5535817)
chr4 (34-99)||(21586964-21587029)
chr4 (9-66)||(39533835-39533892)
chr4 (31-72)||(41459487-41459528)
chr4 (6-66)||(5418594-5418654)
chr4 (1-69)||(16912435-16912503)
chr4 (6-66)||(20215568-20215628)
chr4 (6-66)||(20814608-20814668)
chr4 (1-65)||(22720586-22720650)
chr4 (6-66)||(52817646-52817706)
[»] chr8 (25 HSPs)
chr8 (7-115)||(24052858-24052966)
chr8 (6-70)||(15037751-15037815)
chr8 (6-66)||(28882665-28882725)
chr8 (7-66)||(7410644-7410703)
chr8 (28-114)||(6189665-6189751)
chr8 (10-114)||(12736386-12736491)
chr8 (6-66)||(10934682-10934742)
chr8 (9-69)||(13841852-13841912)
chr8 (1-69)||(17986270-17986338)
chr8 (6-66)||(24820376-24820436)
chr8 (6-66)||(28882743-28882803)
chr8 (6-69)||(31271608-31271671)
chr8 (6-64)||(5888417-5888475)
chr8 (18-64)||(10184636-10184682)
chr8 (6-67)||(1739643-1739704)
chr8 (12-65)||(1988923-1988976)
chr8 (7-64)||(10117051-10117108)
chr8 (13-66)||(24017797-24017850)
chr8 (34-66)||(5222161-5222193)
chr8 (28-64)||(13639415-13639451)
chr8 (28-64)||(13739828-13739864)
chr8 (10-66)||(13964424-13964480)
chr8 (6-66)||(14381239-14381299)
chr8 (6-66)||(40098761-40098821)
chr8 (6-66)||(40098839-40098899)
[»] chr7 (42 HSPs)
chr7 (8-114)||(3967736-3967842)
chr7 (1-107)||(34750324-34750430)
chr7 (10-99)||(37491278-37491367)
chr7 (6-99)||(43813126-43813219)
chr7 (7-65)||(46022628-46022686)
chr7 (1-66)||(2456332-2456397)
chr7 (6-99)||(12274855-12274948)
chr7 (7-66)||(36502325-36502384)
chr7 (7-65)||(7701190-7701248)
chr7 (36-117)||(47712507-47712588)
chr7 (6-66)||(25079208-25079268)
chr7 (6-66)||(25245222-25245282)
chr7 (34-114)||(27163196-27163276)
chr7 (34-66)||(30486663-30486695)
chr7 (11-115)||(35436256-35436360)
chr7 (6-66)||(38238863-38238923)
chr7 (9-93)||(38266249-38266333)
chr7 (1-56)||(2456670-2456725)
chr7 (1-64)||(8127908-8127971)
chr7 (7-114)||(8169128-8169234)
chr7 (6-69)||(8595148-8595211)
chr7 (11-66)||(10599071-10599126)
chr7 (6-69)||(31319592-31319655)
chr7 (1-64)||(37491354-37491417)
chr7 (6-49)||(41803723-41803766)
chr7 (13-64)||(48445972-48446023)
chr7 (48-114)||(2456367-2456433)
chr7 (4-66)||(22106666-22106728)
chr7 (1-67)||(34840610-34840676)
chr7 (4-66)||(40529623-40529685)
chr7 (9-66)||(2943216-2943273)
chr7 (37-118)||(3105973-3106054)
chr7 (11-64)||(18654627-18654680)
chr7 (11-72)||(19688105-19688166)
chr7 (14-65)||(6182996-6183048)
chr7 (14-65)||(6250680-6250732)
chr7 (6-66)||(10095720-10095780)
chr7 (9-69)||(11602843-11602903)
chr7 (7-63)||(21113294-21113350)
chr7 (6-66)||(25079286-25079346)
chr7 (1-41)||(47534966-47535006)
chr7 (51-107)||(47708439-47708495)
[»] chr6 (21 HSPs)
chr6 (4-99)||(14173389-14173484)
chr6 (4-99)||(14177925-14178020)
chr6 (1-64)||(16121046-16121109)
chr6 (9-66)||(14173469-14173525)
chr6 (9-66)||(14178005-14178061)
chr6 (6-99)||(17773547-17773640)
chr6 (4-69)||(31996575-31996640)
chr6 (6-66)||(33053766-33053826)
chr6 (1-64)||(26388272-26388335)
chr6 (37-99)||(3012406-3012468)
chr6 (6-64)||(3203752-3203810)
chr6 (34-72)||(13417492-13417530)
chr6 (7-65)||(16199122-16199180)
chr6 (7-64)||(2950847-2950904)
chr6 (1-114)||(3203667-3203780)
chr6 (1-66)||(31632186-31632251)
chr6 (9-66)||(34379814-34379871)
chr6 (7-63)||(12383671-12383727)
chr6 (8-64)||(13281537-13281593)
chr6 (6-66)||(21506464-21506524)
chr6 (36-72)||(24111172-24111208)
[»] chr1 (41 HSPs)
chr1 (1-99)||(38834607-38834705)
chr1 (1-66)||(10256777-10256842)
chr1 (6-66)||(19175667-19175727)
chr1 (1-66)||(5431419-5431484)
chr1 (5-106)||(15057696-15057797)
chr1 (10-114)||(52923354-52923458)
chr1 (10-66)||(6079142-6079198)
chr1 (6-69)||(39940562-39940625)
chr1 (36-94)||(5246193-5246250)
chr1 (12-66)||(39617315-39617369)
chr1 (1-90)||(28038882-28038971)
chr1 (1-65)||(1409129-1409193)
chr1 (6-66)||(5431342-5431402)
chr1 (6-66)||(14214608-14214668)
chr1 (6-66)||(15057658-15057718)
chr1 (1-69)||(19580269-19580337)
chr1 (6-66)||(31008260-31008320)
chr1 (36-72)||(36163989-36164025)
chr1 (5-65)||(46906861-46906921)
chr1 (6-65)||(24981921-24981980)
chr1 (28-106)||(6735737-6735815)
chr1 (6-64)||(14891819-14891877)
chr1 (4-66)||(19175587-19175649)
chr1 (7-93)||(46829924-46830010)
chr1 (7-69)||(47446707-47446769)
chr1 (10-64)||(50308633-50308687)
chr1 (7-64)||(6156636-6156693)
chr1 (9-66)||(13288413-13288470)
chr1 (1-66)||(13319898-13319963)
chr1 (33-70)||(21909916-21909953)
chr1 (34-83)||(39619221-39619270)
chr1 (6-66)||(639800-639860)
chr1 (36-116)||(748680-748760)
chr1 (10-66)||(8243438-8243494)
chr1 (1-69)||(9675962-9676030)
chr1 (34-66)||(25554572-25554604)
chr1 (6-66)||(33604070-33604130)
chr1 (34-66)||(37096177-37096209)
chr1 (33-65)||(41040224-41040256)
chr1 (6-66)||(48022596-48022656)
chr1 (6-66)||(52923324-52923384)
[»] chr2 (32 HSPs)
chr2 (1-106)||(44587639-44587744)
chr2 (1-64)||(23143567-23143630)
chr2 (1-64)||(23555357-23555420)
chr2 (7-65)||(13333527-13333585)
chr2 (12-92)||(40363226-40363306)
chr2 (1-107)||(2577670-2577777)
chr2 (6-65)||(3098206-3098265)
chr2 (6-65)||(25270936-25270995)
chr2 (6-69)||(27331835-27331898)
chr2 (10-117)||(44587671-44587778)
chr2 (6-64)||(15119858-15119916)
chr2 (8-65)||(41056968-41057025)
chr2 (12-69)||(45472417-45472474)
chr2 (6-66)||(5574189-5574249)
chr2 (6-66)||(38465790-38465850)
chr2 (1-69)||(44274617-44274685)
chr2 (6-65)||(25625848-25625907)
chr2 (10-69)||(32630482-32630541)
chr2 (1-55)||(8996843-8996897)
chr2 (6-64)||(20504244-20504302)
chr2 (12-114)||(41824268-41824369)
chr2 (9-66)||(31024175-31024232)
chr2 (1-66)||(41824339-41824404)
chr2 (10-66)||(1961388-1961444)
chr2 (28-64)||(6336662-6336698)
chr2 (37-109)||(17866216-17866288)
chr2 (1-64)||(20218627-20218690)
chr2 (6-66)||(21183406-21183466)
chr2 (36-64)||(33284755-33284783)
chr2 (6-66)||(38594423-38594483)
chr2 (6-66)||(38598019-38598079)
chr2 (7-70)||(45472484-45472548)
[»] scaffold0113 (1 HSPs)
scaffold0113 (9-65)||(40457-40513)
[»] scaffold0024 (1 HSPs)
scaffold0024 (6-66)||(120224-120284)


Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 14144323 - 14144766
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattc 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  14144323 actctctccggtcactattataagcataaatctactttttaggtttattgaataaatgatgtatgtggtt-aaattaatggccacatacatcacttattc 14144421  T
Q  101 tatgaacc-ttaaaaataannnnnnngcttgtaatagtgactggagcgagtatgagaatagtttacaaactgttgtggaattaaggatttagtttgggta 199  Q
     ||||||| ||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14144422 aatgaacccttaaaaataatgtttttgcttgtaatagtgaccggagcgagtatgagaatagtttacaaactgttgtggaattaaggatttagtttgggta 14144521  T
Q  200 tcgattgatagcttttatctttgattttattttatttcttcaaatgattgtgctaagggggaaagttgtccctcatat--gagttttttaagtatcccaa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  14144522 tcgattgatagcttttatctttgattttattttatttcttcaaatgattgtgctaagggggaaagttgtccctcatatatgagttttgtaagtatcccaa 14144621  T
Q  298 atagtgttacatacagtgtttttggagtttttgagctcatgagctaagaaattaataaagataaaggcatatgagtaaatggataaaaatgagtaaataa 397  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14144622 atagtgttacatatagtgtttttggagtttttgagctcatgagctaagaaattaataaagataaagacatatgagtaaatggataaaaatgagtaaataa 14144721  T
Q  398 ctagagtttaatcgattgtatgcagcggcgaagcgagcactattt 442  Q
    ||||||||||||||||||||||||||||||||||  |||||||||    
T  14144722 ctagagtttaatcgattgtatgcagcggcgaagctggcactattt 14144766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 42910708 - 42910821
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattc 100  Q
    ||||| |||||||||||||||||  | ||| |||||||||||  ||||||||||||||||| |||| || || || ||||||||||| ||||||| ||||    
T  42910708 actctatccggtcactattataaataaaaaactactttttaggattattgaataaatgatgcatgtggtctatataaatggccacattcatcactcattc 42910807  T
Q  101 tatgaaccttaaaa 114  Q
     || ||||| ||||    
T  42910808 aataaacctaaaaa 42910821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 17625642 - 17625700
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||||||||||| |||||||| ||||||||| ||| | |||||||||||||    
T  17625642 ctccggtcactattataagaa-aaatctacattttagattcattcattaaatgatgtatg 17625700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 18033494 - 18033437
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgta 63  Q
    ||||||||||||||||||| | |||||||| ||||||||||||| | | |||||||||    
T  18033494 ctccggtcactattataagcaaaaatctacattttagatttattcatttaatgatgta 18033437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1098771 - 1098703
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||| ||||||||||||||||||| | || | || |||||||||| ||| ||||||| |||||||||||    
T  1098771 actccctccggtcactattataagcaaaagtttattttttagattcatttaataaataatgtatgtagt 1098703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 13356276 - 13356216
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||| ||||||||| | ||||||||||||||  || ||| ||||||||||||||||    
T  13356276 ctccggtcattattataagcaaaaatctactttttaagttcattcaataaatgatgtatgt 13356216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 13654645 - 13654540
Alignment:
Q  8 ccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatgg-ccacatacatcacttattctatgaa 106  Q
    ||||||||||||||||| | ||||  |||||||| ||| ||| |||||||||||||| |||| || ||  |||| |||||||||||| |||||  |||||    
T  13654645 ccggtcactattataagcaaaaattcactttttaaattcattcaataaatgatgtatttagtctatat--atggaccacatacatcatttattgaatgaa 13654548  T
Q  107 ccttaaaa 114  Q
    ||| ||||    
T  13654547 cctaaaaa 13654540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 25792985 - 25792925
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | |||| |||||||||| || ||| | ||||||||||||||    
T  25792985 ctccggtcactattataagcaaaaatttactttttaggttcattcattaaatgatgtatgt 25792925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 2673956 - 2673893
Alignment:
Q  36 tttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    |||||||||||||| ||||||||||| ||||||| || ||||  | |||||||||||| |||||    
T  2673956 tttttagatttattcaataaatgatgcatgtagtctatattatagaccacatacatcatttatt 2673893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 10437776 - 10437713
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||||||||| | ||||| || ||||||||| ||| | ||||| |||||||||||    
T  10437776 ctccggtcactattataagcaaaaatcaacattttagattcatttattaaattatgtatgtagt 10437713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 71260 - 71318
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||||||||||||||| | |||||||  ||||||||| ||| ||| ||||||||||    
T  71260 ctccggtcactattataagcaaaaatctatattttagattcattcaattaatgatgtat 71318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 13391536 - 13391590
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||||||||||| | || || |||||||||||| ||| ||||||||||||||    
T  13391536 ggtcactattataagtaaaagtcaactttttagattcattcaataaatgatgtat 13391590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 15311989 - 15311939
Alignment:
Q  14 actattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||||||| | ||||||| |||||||||| ||| ||||||||||||||    
T  15311989 actattataaggaaaaatctattttttagattcatttaataaatgatgtat 15311939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 19216397 - 19216315
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaaat 116  Q
    ||||||||| |||||| ||||||||||| ||||||| || ||||  | |||||| ||||| |||||  |||||||| ||||||    
T  19216397 actttttagttttattcaataaatgatgcatgtagtctatattatggaccacatgcatcatttattgaatgaacctaaaaaat 19216315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 3100412 - 3100469
Alignment:
Q  12 tcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||| | ||||  || ||||||||| ||| |||||||||||||||||||    
T  3100412 tcactattataagcaaaaattaacattttagattcattcaataaatgatgtatgtagt 3100469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 24433563 - 24433596
Alignment:
Q  33 tactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  24433563 tactttttagatttattgaattaatgatgtatgt 24433596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42910856 - 42910791
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||| ||||||||||||||||||| | ||  ||||||||||| |||||||||| | ||||| ||||    
T  42910856 actccctccggtcactattataagtaaaatactactttttaggtttattgaatgagtgatgaatgt 42910791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 13654510 - 13654570
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | | ||  ||||||||| || ||| ||||||||||||||||    
T  13654510 ctccggtcactattataagtaaatattgactttttaggttcattcaataaatgatgtatgt 13654570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22227125 - 22227057
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||||||||||||||||| | ||||| || |||||| || ||| | |||||||| ||| ||||    
T  22227125 actctctccggtcactattataagcaaaaatcaacgttttaggttcattcattaaatgatatatttagt 22227057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 23914842 - 23914902
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||| |||||||||||  ||| ||| ||||||||||||    
T  23914842 ctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgt 23914902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 26300112 - 26300172
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | |||| ||||||||||||  ||| ||| ||||||||||||    
T  26300112 ctccggtcactaatataagcaaaaatttactttttagatacattcaattaatgatgtatgt 26300172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 36409667 - 36409699
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||||||||||| |||||    
T  36409667 actttttagatttattgaataaatgatatatgt 36409699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 39964291 - 39964385
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcact 95  Q
    |||| ||||||||| ||||||||| | ||| |||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||||||||||    
T  39964291 actccctccggtcattattataagcaaaaaactactttttagattcattgaataaattatgtatgtagtctatattaatggtcacatacatcact 39964385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 39682615 - 39682721
Alignment:
Q  11 gtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaacctt 110  Q
    |||||||||||||| | |||  || ||||||| || |||||||||||||||||||| || || |||||||| |||||||| ||||  ||| ||||||||     
T  39682615 gtcactattataagtaaaaaattattttttaggttcattgaataaatgatgtatgtggtctatattaatggtcacatacaacactctttcaatgaaccta 39682714  T
Q  111 aaaaata 117  Q
    |||||||    
T  39682715 aaaaata 39682721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 21217167 - 21217226
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||||||||| | |||||||| ||||||||| ||| | |||||||||||||    
T  21217167 ctccggtcactattataagcaaaaatctacattttagattcattcattaaatgatgtatg 21217226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 10841831 - 10841773
Alignment:
Q  11 gtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||| ||||||||| | |||||||| |||| |||||||| |||||||||||||||||||    
T  10841831 gtcattattataagcaaaaatctacatttttgatttatttaataaatgatgtatgtagt 10841773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 8256827 - 8256888
Alignment:
Q  5 tctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||| |||||||||||| |  |||| | |||||||||||| ||||||||||||||||    
T  8256827 tctccggtccctattataagaaaacgtctattgtttagatttattcaataaatgatgtatgt 8256888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 331800 - 331859
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||| || ||||| ||||||||| ||||||||||||||    
T  331800 ctccggtcactattataagcaaaaatcaacatttta-atttattgattaaatgatgtatgt 331859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 334801 - 334741
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||||||||||| || | ||| ||| ||||| ||||||| |||||||||||||||    
T  334801 cggtcactattataagaaaaattttacctttaagattcattgaattaatgatgtatgtagt 334741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 27224581 - 27224641
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||  | ||||| || ||||||||||||| | ||||||||||||||    
T  27224581 ctccggtcactattataaacaaaaatcaacattttagatttattcattaaatgatgtatgt 27224641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 36571379 - 36571439
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||||||||| | || | |  |||||||||||||| |||||||||||||||||||    
T  36571379 cggtcactattataagcaaaagtttcttttttagatttattcaataaatgatgtatgtagt 36571439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 105374 - 105433
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||| |||  | ||||  |||||||||||| ||||||||||||||||||||    
T  105374 tccggtcactattgtaaacaaaaattcactttttagattcattgaataaatgatgtatgt 105433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 21217301 - 21217242
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||||| | ||||| || |||||||| |||| | |||||||||||||||||    
T  21217301 ggtcactattataagcaaaaatcaacgttttagatatattcattaaatgatgtatgtagt 21217242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 36566779 - 36566712
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtag 68  Q
    ||||| |||||||||||||||||| | || | | ||||||||||| ||| ||||||||||||| ||||    
T  36566779 actctatccggtcactattataagcaaaagttttctttttagattcattcaataaatgatgtaggtag 36566712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 4190630 - 4190692
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtag 68  Q
    ||||||||||||||||||||| ||||  | ||||||| || ||| ||||||| ||||||||||    
T  4190630 ctccggtcactattataagaaaaaattcattttttagtttcattcaataaattatgtatgtag 4190692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 43906746 - 43906787
Alignment:
Q  28 aaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||||||| |||||||||||||| | ||||||||||    
T  43906746 aaatctactttttatatttattgaataaaaggtgtatgtagt 43906787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 50603649 - 50603592
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||| | ||||||| ||||||  || ||| ||||||||||||||||    
T  50603649 cggtcactattataagcaaaaatctattttttaagttcattcaataaatgatgtatgt 50603592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 54595794 - 54595851
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||| | ||||| || ||||||||| ||| | ||||||||||||||    
T  54595794 cggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgt 54595851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 7882282 - 7882346
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtt 70  Q
    ||||||||||||||||||| | ||||  || ||||||||| ||| | |||||||||||| |||||    
T  7882282 ctccggtcactattataagcaaaaattaacattttagattcattaattaaatgatgtatatagtt 7882346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 32711317 - 32711237
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaa 114  Q
    |||||||||||| ||||||||| |||||||| | || || | ||  ||||| |||||||| |||||| |||||||| ||||    
T  32711317 actttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaacctaaaaa 32711237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 45010863 - 45010827
Alignment:
Q  36 tttttagatttattgaataaatgatgtatgtagttta 72  Q
    |||||||||||||||||||| |||||||| |||||||    
T  45010863 tttttagatttattgaataattgatgtatctagttta 45010827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 48191716 - 48191804
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcac 94  Q
    ||||||||||||||||||  | ||||  || ||||||||| ||| | |||||||||||||| ||||| | ||| | | |||||||||||    
T  48191716 ctccggtcactattataaacaaaaattaacattttagattcattcattaaatgatgtatgtggtttataataaagactacatacatcac 48191804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 51239382 - 51239322
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||||| |||||||||  ||| ||| ||||||||||||    
T  51239382 ctccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtatgt 51239322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 52168284 - 52168344
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | |||| ||||||||||||  ||| ||| ||||||||||||    
T  52168284 ctccggtcactaatataagcaaaaatttactttttagatacatttaattaatgatgtatgt 52168344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 52216019 - 52215959
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||| || ||||||||| | | | ||||||||||||||    
T  52216019 ctccggtcactattataagcaaaaatcaacattttagattcactcattaaatgatgtatgt 52215959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 52931812 - 52931752
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||  |||||| | |||||||||||||||||  ||| ||| ||||||||||||    
T  52931812 ctccggtcactgatataagtaaaaatctactttttagatacattcaattaatgatgtatgt 52931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 31089999 - 31089914
Alignment:
Q  32 ctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaaata 117  Q
    |||||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||||| |||| |||||||| |||||||    
T  31089999 ctactttttagattcattgaataaatgatgtatgtggtctatattaatggtcacatacatcactcattcaatgaacctaaaaaata 31089914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 19934639 - 19934750
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatgg-ccacatacatcacttattctatg 104  Q
    ||||||||||||||||||| | || || |||||||||||| ||| |||||||||||||||| || | | ||||||| |||||||||||| |||||  |||    
T  19934639 ctccggtcactattataagcaaaattccactttttagattcattcaataaatgatgtatgtggtct-atttaatggaccacatacatcatttattgaatg 19934737  T
Q  105 aaccttaaaaata 117  Q
    || || |||||||    
T  19934738 aatctaaaaaata 19934750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 54164814 - 54164925
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatgg-ccacatacatcacttattctatg 104  Q
    ||||||||||||||||||| | || || |||||||||||| ||| |||||||||||||||| || | | ||||||| |||||||||||| |||||  |||    
T  54164814 ctccggtcactattataagcaaaattccactttttagattcattcaataaatgatgtatgtggtct-atttaatggaccacatacatcatttattgaatg 54164912  T
Q  105 aaccttaaaaata 117  Q
    || || |||||||    
T  54164913 aatctaaaaaata 54164925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 54164952 - 54164892
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||||| |||||||||| ||| ||||||||||||||||    
T  54164952 ctccggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgt 54164892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 29006837 - 29006896
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||||| | ||||||| |||||||||| ||| ||||||||||||||||    
T  29006837 tccggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgt 29006896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 4406243 - 4406329
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatca 93  Q
    |||||||||||||||||| | ||||| || ||||||||||||| | |||||||||||||| || || | ||| | ||||||||||||    
T  4406243 tccggtcactattataagtaaaaatcaacattttagatttattcattaaatgatgtatgtggtctataataaagaccacatacatca 4406329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 16171048 - 16170986
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||||||||||| | ||||| || ||||||||||||| | |||||||||||||||||    
T  16171048 tccggtcactattataaggaaaaatcaacattttagatttattaattaaatgatgtatgtagt 16170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 38381977 - 38382043
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagttta 72  Q
    ||||||||||||||||||| | |||| ||| ||||||||| ||||| |||||||||||||| |||||    
T  38381977 ctccggtcactattataagcaaaaatttacattttagattcattgattaaatgatgtatgtggttta 38382043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 19934777 - 19934717
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||| ||||||||||||| | ||||||| |||||||||| ||| ||||||||||||||||    
T  19934777 ctccgatcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgt 19934717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31933643 - 31933734
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatc 92  Q
    |||| ||||||||||||||||||| | |  ||||||||||||||| ||| |||||||||||| ||| ||||| |||   | |||||||||||    
T  31933643 actccctccggtcactattataagcaaatttctactttttagattcatttaataaatgatgtctgtggtttacattgtagaccacatacatc 31933734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 56257479 - 56257416
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||||||||||||||||||||||| | |||  ||||||||||||| ||||||||| | ||||||    
T  56257479 actctctccggtcactattataagtaaaaagttactttttagattcattgaataactcatgtat 56257416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 56364465 - 56364406
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||||||||| | |||||||| ||||||||| ||| | |||||||||||||    
T  56364465 ctccggtcactattataagtaaaaatctacattttagattcattcattaaatgatgtatg 56364406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 11796716 - 11796662
Alignment:
Q  13 cactattataagaataaatctactttttagatttattgaataaatgatgtatgta 67  Q
    |||||||||||| | ||||  |||||||||||||||| |||||||||||||||||    
T  11796716 cactattataagcaaaaattcactttttagatttattcaataaatgatgtatgta 11796662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 9600002 - 9600038
Alignment:
Q  33 tactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||| |||||||||||||||||||||||    
T  9600002 tactttttagattcattgaataaatgatgtatgtagt 9600038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 27587251 - 27587363
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatga 105  Q
    ||||||||  |||||||||||  |||  ||||||||||||||||  ||||||||||||| |||| || ||| ||  | | |||||| | |||||| ||||    
T  27587251 ctccggtccttattataagaaacaattgactttttagatttattatataaatgatgtatctagtgtatatttataacgagatacattaattattcaatga 27587350  T
Q  106 accttaaaaataa 118  Q
    |||| ||||||||    
T  27587351 acctaaaaaataa 27587363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 29006974 - 29006914
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | || || |||||||| ||| ||| ||||||||||||||||    
T  29006974 ctccggtcactattataagcaaaattccactttttaaattcattcaataaatgatgtatgt 29006914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 46462409 - 46462489
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaa 114  Q
    |||||||||||| ||| |||||||||||||| | ||||| | ||| | | |||||||||| |||||| |||||||| ||||    
T  46462409 actttttagattcattaaataaatgatgtatatggtttataataaagactacatacatcatttattcaatgaacctaaaaa 46462489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46518564 - 46518496
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||| |||||| ||||||||| | ||||  ||||||||| |||||| |||||||||||||| ||||    
T  46518564 actctcttcggtcattattataagcaaaaattaactttttaggtttattcaataaatgatgtatttagt 46518496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 16468343 - 16468300
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttatt 49  Q
    |||||||||||||||||| || |||||||| |||||||||||||    
T  16468343 ctccggtcactattataataaaaaatctacattttagatttatt 16468300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 19936604 - 19936569
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19936604 actttttagatttattgaataaatgatgtatctagt 19936569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 21790244 - 21790151
Alignment:
Q  6 ctccggtcactattataag-aataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattc 100  Q
    |||||| |||||||||||| || ||| ||| ||||||| ||||| ||||||||||||||||| | ||| ||||||| |||||| ||||||| ||||    
T  21790244 ctccggacactattataagcaaaaaaacta-tttttaggtttatcgaataaatgatgtatgt-ggttatattaatgaccacattcatcactcattc 21790151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 22020112 - 22020183
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagttta 72  Q
    |||| ||| ||||||||||||||| | || |  |||||||||||| ||| |||||||||| |||||||||||    
T  22020112 actccctctggtcactattataagcaaaagttcactttttagattcattcaataaatgatatatgtagttta 22020183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 26636573 - 26636518
Alignment:
Q  12 tcactattataagaataaatctactttttagatttattgaataaatgatgtatgta 67  Q
    ||||||||||||| | |||| || |||||||||| ||| |||||||||||||||||    
T  26636573 tcactattataagtaaaaatttattttttagattcattcaataaatgatgtatgta 26636518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 39160953 - 39160894
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||||||||  | |||||||| ||||||||| ||| | |||||||||||||    
T  39160953 ctccggtcactattataaacaaaaatctacattttagattcattcattaaatgatgtatg 39160894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 47181560 - 47181619
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||||||||| | |||||||| ||||| ||| ||| | |||||||||||||    
T  47181560 ctccggtcactattataagcaaaaatctacattttaaattcattcattaaatgatgtatg 47181619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 53410915 - 53410966
Alignment:
Q  12 tcactattataagaataaatctactttttagatttattgaataaatgatgta 63  Q
    ||||||||||||| | ||||||| |||||||||| ||||||| |||||||||    
T  53410915 tcactattataagtaaaaatctagtttttagattcattgaatgaatgatgta 53410966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 6087567 - 6087509
Alignment:
Q  11 gtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||| |||||||| | |||| || |||| ||||||||| |||||||||||||||||||    
T  6087567 gtcacaattataagcaaaaatttaattttcagatttattcaataaatgatgtatgtagt 6087509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22235404 - 22235327
Alignment:
Q  1 actctctccggtcactattataag-aataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaa 78  Q
    |||| ||||||||||||||||||| || ||||| || ||||||||| ||||||||| |||||||| | ||||| |||||    
T  22235404 actccctccggtcactattataagcaaaaaatc-acattttagattcattgaataactgatgtatctggtttatattaa 22235327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 52281120 - 52281182
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||||||||||| | |||| | | ||||| ||| ||| |||||||||||||||||||    
T  52281120 tccggtcactattataagcaaaaatatgcattttatattcattcaataaatgatgtatgtagt 52281182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 52673594 - 52673664
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagttt 71  Q
    |||| |||| |||||||||||||| | || | |||||||||||| |||||||||| | |||||| ||||||    
T  52673594 actccctcccgtcactattataagcaaaactttactttttagatatattgaataattaatgtatctagttt 52673664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 1829685 - 1829628
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||||| ||||||||||  ||||| |||| ||||||||| ||| ||||||||||||||    
T  1829685 tccggttactattataaacataaaactacattttagattcatttaataaatgatgtat 1829628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 5535745 - 5535817
Alignment:
Q  36 tttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaacct 109  Q
    |||||||||| ||| |||||||||||||||||||||| | ||  | |||||||||||| |||||  ||||||||    
T  5535745 tttttagattcattcaataaatgatgtatgtagtttata-tatagaccacatacatcagttattgaatgaacct 5535817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 21587029 - 21586964
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    |||||||||||| ||| ||||||||||||||||||| || | ||  || ||||||||||| |||||    
T  21587029 actttttagattcattcaataaatgatgtatgtagtctataatataggacacatacatcatttatt 21586964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 39533892 - 39533835
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||| ||||||||| | ||||| || ||||||||||||| | ||||||||||||||    
T  39533892 cggtcattattataagcaaaaatcaacattttagatttattcattaaatgatgtatgt 39533835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 41459528 - 41459487
Alignment:
Q  31 tctactttttagatttattgaataaatgatgtatgtagttta 72  Q
    ||||||||||||||| ||| |||||||||| |||||||||||    
T  41459528 tctactttttagattcattcaataaatgatttatgtagttta 41459487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 5418654 - 5418594
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||| |||||| |||||| | |||| ||||||||||||  ||||||| ||||||||||||    
T  5418654 ctccgatcactaatataagcaaaaatttactttttagatacattgaattaatgatgtatgt 5418594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 16912435 - 16912503
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||| ||||| ||| ||||||||| | || | || |||||||||| ||| |||||||||||||||||||    
T  16912435 actccctccgatcaatattataagtaaaagtgtaatttttagattcattcaataaatgatgtatgtagt 16912503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 20215568 - 20215628
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||  || |||||| || ||| ||||||||||||||||    
T  20215568 ctccggtcactattataagcaaaaattgacattttaggttcattcaataaatgatgtatgt 20215628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 20814668 - 20814608
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||  | |  ||||||||||||||| ||| ||||||||||| ||||    
T  20814668 ctccggtcactattataaacaaatttctactttttagattcattcaataaatgatgcatgt 20814608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22720650 - 22720586
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    |||| ||||||||||||||||||| | || || |||||||||||  ||||||||| | |||||||    
T  22720650 actccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtatg 22720586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 52817706 - 52817646
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||| |||||||||||  ||| ||| ||||||||||||    
T  52817706 ctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgt 52817646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 24052966 - 24052858
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaa 106  Q
    |||||||||||||||||  | ||||||||||||||| || |||||||||||||||||| | ||||| |||||| |  | ||||||||||| ||| |||||    
T  24052966 tccggtcactattataaacaaaaatctactttttaggttcattgaataaatgatgtatatggtttatattaatagatatatacatcactttttcaatgaa 24052867  T
Q  107 ccttaaaaa 115  Q
    ||| |||||    
T  24052866 cctaaaaaa 24052858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 15037751 - 15037815
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtt 70  Q
    ||||||||| ||||||||  | ||||||||||||||| || ||| ||||||||||||||||||||    
T  15037751 ctccggtcagtattataaacaaaaatctactttttaggttcattcaataaatgatgtatgtagtt 15037815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 28882665 - 28882725
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||| || | || ||||||||||||||| ||| ||||||||||||||||    
T  28882665 ctccggtcactattatgagcaaaagtctactttttagattcattcaataaatgatgtatgt 28882725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 7410703 - 7410644
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||||| | | |||| |||||||| |||||| ||||||||||||||||    
T  7410703 tccggtcactattataagcaaatatctgctttttaggtttattaaataaatgatgtatgt 7410644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 6189751 - 6189665
Alignment:
Q  28 aaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaa 114  Q
    ||||| || ||||||||| ||| |||||||||||||| |||| || |||| || ||| |||||||| |||||| |||||||| ||||    
T  6189751 aaatcaacgttttagattcattcaataaatgatgtatttagtctatattattgaccaaatacatcatttattcgatgaacctaaaaa 6189665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 12736491 - 12736386
Alignment:
Q  10 ggtcactattataag-aataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaacc 108  Q
    ||||||||||||||| || ||| ||| || |||| || |||||||||||||||||| | || || |||||||  ||||||||||| | |||| |||||||    
T  12736491 ggtcactattataagcaaaaaaactatttcttaggttcattgaataaatgatgtatatggtctacattaatgatcacatacatcaatcattcaatgaacc 12736392  T
Q  109 ttaaaa 114  Q
    | ||||    
T  12736391 taaaaa 12736386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 10934742 - 10934682
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||| || ||||||||| ||| | ||||||||||||||    
T  10934742 ctccggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgt 10934682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 13841852 - 13841912
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||||||||| | |||| ||||||||| ||| ||| |||||||||||||| ||||    
T  13841852 cggtcactattataagcaaaaatttactttttaaattcattcaataaatgatgtatttagt 13841912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17986338 - 17986270
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||| ||||||||||||| | ||||| ||||||||| || ||| | |||||||||||| ||||    
T  17986338 actctctccgatcactattataagtaaaaatcaactttttaggttcattcattaaatgatgtatttagt 17986270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 24820436 - 24820376
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||   ||||||||||| ||| ||||||||||||||||    
T  24820436 ctccggtcactattataagcaaaaattctctttttagattcattcaataaatgatgtatgt 24820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 28882803 - 28882743
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||| || |||||| |||||| |||||||||| |||||    
T  28882803 ctccggtcactattataagcaaaaatcaaccttttaggtttattcaataaatgatatatgt 28882743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 31271671 - 31271608
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||||||||| | ||||| |||||| | ||||||| ||||| |||||||| ||||    
T  31271671 ctccggtcactattataagcaaaaatcaacttttcaaatttattcaataagtgatgtatttagt 31271608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 5888475 - 5888417
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||||| |||||||||||| | ||||||||||| |||||| ||| ||| ||||||||||    
T  5888475 ctccgggcactattataagcaaaaatctactttgtagattcattcaattaatgatgtat 5888417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 10184682 - 10184636
Alignment:
Q  18 ttataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||||    
T  10184682 ttataagaaaaaatcgactttttagattcattgaataattgatgtat 10184636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 1739704 - 1739643
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgta 67  Q
    |||||||||||| |||||| | |||| ||||||||||||  ||| ||| |||||||||||||    
T  1739704 ctccggtcactaatataagcaaaaatttactttttagatacattcaattaatgatgtatgta 1739643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 1988976 - 1988923
Alignment:
Q  12 tcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||  | |||| || |||||| |||||||||||||||||||||||    
T  1988976 tcactattataaacaaaaatatattttttaaatttattgaataaatgatgtatg 1988923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 10117108 - 10117051
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||||||||||||||||| | |||| ||| ||||||||| ||| ||| ||||||||||    
T  10117108 tccggtcactattataagcaaaaatttacattttagattcattcaattaatgatgtat 10117051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 24017850 - 24017797
Alignment:
Q  13 cactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| | ||||| || ||||||||||||| | ||||||||||||||    
T  24017850 cactattataagcaaaaatcaacattttagatttattaattaaatgatgtatgt 24017797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 5222161 - 5222193
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||||||||| |||||||    
T  5222161 actttttagatttattgaataaatgttgtatgt 5222193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 13639451 - 13639415
Alignment:
Q  28 aaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  13639451 aaatctaatttttagatttattgaataattgatgtat 13639415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 13739864 - 13739828
Alignment:
Q  28 aaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  13739864 aaatctaatttttagatttattgaataattgatgtat 13739828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 13964424 - 13964480
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||| | ||||| || ||||| ||| ||| ||||||||||||||||    
T  13964424 ggtcactattataagcaaaaatcaacattttaaattcattcaataaatgatgtatgt 13964480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 14381239 - 14381299
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||| |||||||||||  ||| ||| ||||||||||||    
T  14381239 ctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgt 14381299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 40098761 - 40098821
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | |||||||||||||||||  ||| ||| |||||| |||||    
T  40098761 ctccggtcactaatataagcaaaaatctactttttagatacattcaattaatgatatatgt 40098821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 40098899 - 40098839
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||| |||||||||||  ||| ||| ||||||||||||    
T  40098899 ctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgt 40098839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3967842 - 3967736
Alignment:
Q  8 ccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaac 107  Q
    ||||||||||||||||| | ||| ||||||||||| || |||||||||||||||||||| |  || |||||||| ||  ||||||||| |||| ||||||    
T  3967842 ccggtcactattataagcaaaaaactactttttaggttcattgaataaatgatgtatgtggactatattaatggtcaattacatcactcattcaatgaac 3967743  T
Q  108 cttaaaa 114  Q
    || ||||    
T  3967742 ctaaaaa 3967736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 34750324 - 34750430
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattc 100  Q
    |||| ||||||| ||||||||||| | ||||||||||||||| || |  ||||||||||||||| | || ||||| |||| |||| ||||||||||||||    
T  34750324 actccctccggttactattataagcaaaaatctactttttaggttcaccgaataaatgatgtatatggtctaaatcaatgaccacgtacatcacttattc 34750423  T
Q  101 tatgaac 107  Q
     ||||||    
T  34750424 aatgaac 34750430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 37491278 - 37491367
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    ||||||||||||||| | |||| ||||||||||||||||| ||||||||||||||||||| || || | || ||| |||||||| |||||    
T  37491278 ggtcactattataagcaaaaatttactttttagatttattaaataaatgatgtatgtagtctatataagtgaccatatacatcatttatt 37491367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 43813126 - 43813219
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    ||||||||||||||||||| | |||| || |||||||||| ||| ||||||||| ||||||||| || | || || |||||||||||| |||||    
T  43813126 ctccggtcactattataagcaaaaatttaatttttagattcattcaataaatgaagtatgtagtctataatattgaccacatacatcatttatt 43813219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 46022686 - 46022628
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    |||||||||||||||||||| |||||||| ||||||||| ||| | |||||||||||||    
T  46022686 tccggtcactattataagaaaaaatctacattttagattcattcattaaatgatgtatg 46022628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2456332 - 2456397
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||| ||||| ||||||||||||| | ||||||||||||||| || ||||||| ||||||||||||    
T  2456332 actccctccgatcactattataagcaaaaatctactttttaggttcattgaattaatgatgtatgt 2456397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 12274948 - 12274855
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    ||||||| ||||||||||| | |||| ||||||||||||| ||| |||| || |||||||| || || ||||  |||||||||||||| |||||    
T  12274948 ctccggtaactattataagcaaaaatgtactttttagattcattcaatatataatgtatgtggtctatattataggccacatacatcatttatt 12274855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 36502384 - 36502325
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||||  | |||| || |||||||||||| ||||||||||||||||||    
T  36502384 tccggtcactattataaacaaaaatatattttttagatttactgaataaatgatgtatgt 36502325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 7701190 - 7701248
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    |||||||||||||||||| | |||||||| ||||||||| ||| | |||||||||||||    
T  7701190 tccggtcactattataagcaaaaatctacattttagattcattcattaaatgatgtatg 7701248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 47712588 - 47712507
Alignment:
Q  36 tttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaaata 117  Q
    |||||||||| ||| |||||||||||||||| ||||| ||||||| | | ||| |||||| |||| |||||| | |||||||    
T  47712588 tttttagattcatttaataaatgatgtatgtggtttatattaatgacaagatatatcactcattcaatgaacttcaaaaata 47712507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 25079208 - 25079268
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | |||||||||||||||||  ||| ||| ||||||||||||    
T  25079208 ctccggtcactaatataagcaaaaatctactttttagatacattcaattaatgatgtatgt 25079268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 25245282 - 25245222
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||| || ||||||||| ||| | ||||||||||||||    
T  25245282 ctccggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgt 25245222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 27163276 - 27163196
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaa 114  Q
    |||||||||||| | | |||||||||||||||| ||||| | ||  | |||||||||||| |||||| |||||||| ||||    
T  27163276 actttttagattcactaaataaatgatgtatgtggtttataatatagaccacatacatcatttattcaatgaacctaaaaa 27163196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 30486695 - 30486663
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||||||||||||||||||||    
T  30486695 actttttagatttattgaataaatgatgtatgt 30486663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 35436360 - 35436256
Alignment:
Q  11 gtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaacctt 110  Q
    |||||||||||||| | ||| | ||||||||| || ||||||||| |||||||| |||| || | || || ||| |||||| | |||||| ||||||||     
T  35436360 gtcactattataagtaaaaaaccactttttaggttcattgaataattgatgtatctagtatataatattgaccagatacataagttattcaatgaaccta 35436261  T
Q  111 aaaaa 115  Q
    |||||    
T  35436260 aaaaa 35436256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 38238923 - 38238863
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | |||||||||||||||||  ||| ||| ||||||||||||    
T  38238923 ctccggtcactaatataagcaaaaatctactttttagatacattcaattaatgatgtatgt 38238863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 38266333 - 38266249
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatca 93  Q
    |||| ||||||| ||| | |||||||| ||||||||||||| | |||||||| |||||| | || | ||||| ||||||||||||    
T  38266333 cggttactattaaaagcaaaaatctacattttagatttattcattaaatgatatatgtactctataataatgaccacatacatca 38266249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2456725 - 2456670
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaa 56  Q
    |||| ||| ||||||||||||||| | ||| |||||||||||||| ||||||||||    
T  2456725 actccctctggtcactattataagtaaaaaactactttttagattcattgaataaa 2456670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8127971 - 8127908
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||| ||||||||||||||||||  | ||||| ||| |||||||| ||| ||||||||||||||    
T  8127971 actccctccggtcactattataaacaaaaatcaactgtttagattcattcaataaatgatgtat 8127908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 8169234 - 8169128
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaa 106  Q
    |||||| ||||||||||| | || |  |||||||||||| ||| ||||||||||||||||||| || | ||  | |||||||||||| |||||  |||||    
T  8169234 tccggttactattataagcaaaagttaactttttagattcattcaataaatgatgtatgtagtctata-tatagaccacatacatcatttattgaatgaa 8169136  T
Q  107 ccttaaaa 114  Q
    ||| ||||    
T  8169135 cctaaaaa 8169128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 8595148 - 8595211
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||| | |||||||| |||| || |||||||||| ||| | |||||||||||||||||    
T  8595148 ctccggtcacaaatataagaaaaaatttattttttagattcattcattaaatgatgtatgtagt 8595211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 10599126 - 10599071
Alignment:
Q  11 gtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||| | ||||||| ||||||| || ||| ||||||||||||||||    
T  10599126 gtcactattataagtaaaaatctattttttaggttcattcaataaatgatgtatgt 10599071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 31319655 - 31319592
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||| ||||||||||||| | |||| || |||||||||| ||| || ||||||||||||||||    
T  31319655 ctccgatcactattataaggaaaaatatattttttagattcattcaaaaaatgatgtatgtagt 31319592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 37491417 - 37491354
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||||| |||||||||||||  | || | ||||||||||||| ||| ||||||||||||||    
T  37491417 actctctccagtcactattataatcaaaagtttactttttagattcatttaataaatgatgtat 37491354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 41803723 - 41803766
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttatt 49  Q
    |||||||||||||||||| || |||||||| |||||||||||||    
T  41803723 ctccggtcactattataacaaaaaatctacattttagatttatt 41803766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 48445972 - 48446023
Alignment:
Q  13 cactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||||||||||  | |||| ||||||||||||||||||||||| ||||||||    
T  48445972 cactattataaagaaaaatttactttttagatttattgaataattgatgtat 48446023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 2456433 - 2456367
Alignment:
Q  48 ttgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaa 114  Q
    ||||||||||||| ||||| || || ||||||| |||||||||||| | |||| |||||||| ||||    
T  2456433 ttgaataaatgatatatgtggtctatattaatgtccacatacatcattaattcaatgaacctaaaaa 2456367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 22106666 - 22106728
Alignment:
Q  4 ctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||| |||||||| |||||| | ||||||| ||||||||| |||| ||| ||||||||||||    
T  22106666 ctctctggtcactaatataagcaaaaatctattttttagatatattcaattaatgatgtatgt 22106728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34840610 - 34840676
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgta 67  Q
    |||| ||||||||| ||||||||| | || |  |||||||||||| ||| |||||||||||||||||    
T  34840610 actccctccggtcattattataagcaaaagttcactttttagattcattcaataaatgatgtatgta 34840676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 40529685 - 40529623
Alignment:
Q  4 ctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||| |||||||| |||||| | ||||||| ||||||||| |||| ||| ||||||||||||    
T  40529685 ctctctggtcactaatataagcaaaaatctattttttagatatattcaattaatgatgtatgt 40529623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 2943216 - 2943273
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||| | ||||| || ||||||||| ||| | ||||||||||||||    
T  2943216 cggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgt 2943273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 3106054 - 3105973
Alignment:
Q  37 ttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaaataa 118  Q
    |||||| || ||| |||||||||||||||| || || |||||||| || ||||| |||| |||| || ||||| ||||||||    
T  3106054 ttttaggttcattcaataaatgatgtatgtggtctatattaatggtcatatacaacactcattcaataaacctaaaaaataa 3105973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 18654680 - 18654627
Alignment:
Q  11 gtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||||||||||||| | || | || |||||||||||||| ||||||||||||||    
T  18654680 gtcactattataagtacaagtttattttttagatttatttaataaatgatgtat 18654627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 19688105 - 19688166
Alignment:
Q  11 gtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagttta 72  Q
    |||||||||||||| | |||  ||| |||||| || ||| ||||||||||||||||||||||    
T  19688105 gtcactattataagcaaaaaaatacattttaggttcattcaataaatgatgtatgtagttta 19688166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 6183048 - 6182996
Alignment:
Q  14 actattataagaataaatctactt-tttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||| ||||||| || |||||||| ||| |||||||||||||||    
T  6183048 actattataagaaaaaatctatttgtttagattcatttaataaatgatgtatg 6182996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 6250732 - 6250680
Alignment:
Q  14 actattataagaataaatctactt-tttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||| ||||||| || |||||||| ||| |||||||||||||||    
T  6250732 actattataagaaaaaatctatttgtttagattcatttaataaatgatgtatg 6250680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 10095720 - 10095780
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||  || ||||||||| ||| | ||||||||||||||    
T  10095720 ctccggtcactattataagcaaaaattaacattttagattcattcattaaatgatgtatgt 10095780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 11602903 - 11602843
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||||||||  | || |  |||||||||||| ||| |||||||||||||||||||    
T  11602903 cggtcactattataaacaaaagttcactttttagattcattcaataaatgatgtatgtagt 11602843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 21113350 - 21113294
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgta 63  Q
    ||||||| |||||| ||||| ||||   ||||||||||||||| |||||||||||||    
T  21113350 tccggtcgctattaaaagaaaaaattagctttttagatttattcaataaatgatgta 21113294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 25079346 - 25079286
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||  | |||||||||||||||||  ||| ||| ||||||||||||    
T  25079346 ctccggtcactaatataaacaaaaatctactttttagatacattcaattaatgatgtatgt 25079286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47534966 - 47535006
Alignment:
Q  1 actctctccggtcactattataagaataaatctacttttta 41  Q
    |||||||||||||||||||||||| | ||| ||||||||||    
T  47534966 actctctccggtcactattataagcaaaaaactacttttta 47535006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 47708495 - 47708439
Alignment:
Q  51 aataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaac 107  Q
    |||||||||||||||| || || ||||||| | |||||||||||| |||| ||||||    
T  47708495 aataaatgatgtatgtggtctatattaatgacaacatacatcactcattcaatgaac 47708439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 14173389 - 14173484
Alignment:
Q  4 ctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    ||||| ||||||||||||||| | ||||||| |||||||||| ||| ||||||||| ||||||||| || | || || |||||||||||| |||||    
T  14173389 ctctctggtcactattataagcaaaaatctaatttttagattcattcaataaatgaagtatgtagtctataatattgaccacatacatcatttatt 14173484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 14177925 - 14178020
Alignment:
Q  4 ctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    ||||| ||||||||||||||| | ||||||| |||||||||| ||| ||||||||| ||||||||| || | || || |||||||||||| |||||    
T  14177925 ctctctggtcactattataagcaaaaatctaatttttagattcattcaataaatgaagtatgtagtctataatattgaccacatacatcatttatt 14178020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16121109 - 16121046
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||| ||||| ||||||||||||| | ||||| |||||||||||| ||| ||||||||||||||    
T  16121109 actccctccgatcactattataagcaaaaatcaactttttagattcattaaataaatgatgtat 16121046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 14173525 - 14173469
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||| |||||||||| |||||||||| ||||||| ||| ||||||||||||||||    
T  14173525 cggtcacaattataagaa-aaatctacttcttagattcattcaataaatgatgtatgt 14173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 14178061 - 14178005
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||| |||||||||| |||||||||| ||||||| ||| ||||||||||||||||    
T  14178061 cggtcacaattataagaa-aaatctacttcttagattcattcaataaatgatgtatgt 14178005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 17773640 - 17773547
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    |||||||||||| |||||| | |||||||||||||||||  ||| ||| ||||||||||||  | || | ||| | |||||||||||| |||||    
T  17773640 ctccggtcactaatataagcaaaaatctactttttagatacattcaattaatgatgtatgtgatatataataaagaccacatacatcatttatt 17773547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 31996640 - 31996575
Alignment:
Q  4 ctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||||||||||| | ||||| || |||||| || ||| | |||||||||||||||||    
T  31996640 ctctccggtcactattataagcaaaaatcaacattttaggttcatttattaaatgatgtatgtagt 31996575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 33053766 - 33053826
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||| | |||||||| |||||||  ||||||||| ||| ||||||||||||||||    
T  33053766 ctccggtcacaaatataagaaaaaatctatgttttagattcattcaataaatgatgtatgt 33053826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26388335 - 26388272
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||| ||||||||||||||||||||| || || |||||||| || |||||||||| | ||||||    
T  26388335 actccctccggtcactattataagaaaaactccactttttatatatattgaataattaatgtat 26388272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 3012468 - 3012406
Alignment:
Q  37 ttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    ||||||||| ||| |||||||||||||||| ||||| | ||| | |||||||||||| |||||    
T  3012468 ttttagattcattcaataaatgatgtatgttgtttacaataaagaccacatacatcatttatt 3012406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 3203810 - 3203752
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||| |||||||||||||| | ||||| ||||||||| || ||| ||||||||||||||    
T  3203810 ctccagtcactattataagcaaaaatcaactttttaggttcatttaataaatgatgtat 3203752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 13417530 - 13417492
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgtagttta 72  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  13417530 actttttagatttattgaataattgatgtatttagttta 13417492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 16199122 - 16199180
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    |||||||||||||||||| | |||||||| |||||| || ||| | |||||||||||||    
T  16199122 tccggtcactattataagcaaaaatctacattttaggttcattcattaaatgatgtatg 16199180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 2950904 - 2950847
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||||||| ||||||||| |  |||| ||||||||| ||||| |||||||||||||||    
T  2950904 tccggtcattattataagcaataatcaactttttaggtttatcgaataaatgatgtat 2950847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 3203667 - 3203780
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattc 100  Q
    |||| ||||||||||||||||||| | ||||| | ||||||| || ||| ||| ||||||||||  ||| || |||  || ||| |||||||| |||||     
T  3203667 actccctccggtcactattataagcaaaaatcaattttttaggttcattcaatgaatgatgtatcaagtctatattcttgaccaaatacatcatttatta 3203766  T
Q  101 tatgaaccttaaaa 114  Q
     |||||||| ||||    
T  3203767 aatgaacctaaaaa 3203780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31632251 - 31632186
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||| ||||||||||||||||||| | || |  ||||||||| || ||| ||||||||||||||||    
T  31632251 actccctccggtcactattataagtaaaagttgactttttaggttcatttaataaatgatgtatgt 31632186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 34379871 - 34379814
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||| | ||||| || ||||||||| ||| | ||||||||||||||    
T  34379871 cggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgt 34379814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 12383727 - 12383671
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgta 63  Q
    |||||||||||||||||  | |||||||| ||||||||| ||| ||| |||||||||    
T  12383727 tccggtcactattataaacaaaaatctacattttagattaattcaattaatgatgta 12383671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 13281537 - 13281593
Alignment:
Q  8 ccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||||||||||||| | |||||||  ||||||||| ||| ||| ||||||||||    
T  13281537 ccggtcactattataagcaaaaatctagattttagattcattcaattaatgatgtat 13281593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 21506464 - 21506524
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||| |||||||||||  ||| ||| ||||||||||||    
T  21506464 ctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgt 21506524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 24111208 - 24111172
Alignment:
Q  36 tttttagatttattgaataaatgatgtatgtagttta 72  Q
    |||||||||||||| |||||||||||||| |||||||    
T  24111208 tttttagatttattcaataaatgatgtatatagttta 24111172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38834607 - 38834705
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    |||| ||||||||||||||||||| | |||| || |||||||||| ||| |||||||||||||| |||| || || |||| ||| |||||||| |||||    
T  38834607 actccctccggtcactattataagcaaaaatttattttttagattcattaaataaatgatgtatatagtctatataaatgaccatatacatcatttatt 38834705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10256777 - 10256842
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||| ||||||||||||||| ||||  |||||||||||| ||| ||||||||||||||||    
T  10256777 actctctccgatcactattataagaaaaaattcactttttagattcattcaataaatgatgtatgt 10256842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 19175727 - 19175667
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||| |||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||    
T  19175727 ctccagtcactattataagcaaaaatctactttttagattcattcaataaatgatgtatgt 19175667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5431484 - 5431419
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||| |||||| | ||||  |||||||||||| ||| ||||||||||||||||    
T  5431484 actctctccggtcactaatataagcaaaaattaactttttagattcattcaataaatgatgtatgt 5431419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 15057797 - 15057696
Alignment:
Q  5 tctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatg 104  Q
    |||||||||| ||||||||| | | | |||||| |||| || ||| ||||||| |||||||| || || ||||||| |||||||||||||| |||| |||    
T  15057797 tctccggtcagtattataagcaaacaactacttattaggttcattaaataaattatgtatgtggtctatattaatgaccacatacatcactcattcaatg 15057698  T
Q  105 aa 106  Q
    ||    
T  15057697 aa 15057696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 52923458 - 52923354
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatgg-ccacatacatcacttattctatgaacc 108  Q
    ||||||||||||||| | ||||||||||||||| || ||| |||||||||||||||| | |  | ||||||| |||||||||||| |||||  |||||||    
T  52923458 ggtcactattataagcaaaaatctactttttaggttcattcaataaatgatgtatgt-gatatatttaatggaccacatacatcatttattgaatgaacc 52923360  T
Q  109 ttaaaa 114  Q
    | ||||    
T  52923359 taaaaa 52923354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 6079198 - 6079142
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||| ||||| || ||||||||| ||| ||||||||||||||||    
T  6079198 ggtcactattataagaaaaaatccaccttttagattcattcaataaatgatgtatgt 6079142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 39940625 - 39940562
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||| ||||||||||||| | |||| ||||||||||||| ||| ||||||| |||||||||||    
T  39940625 ctccgatcactattataagtaaaaatttactttttagattcattcaataaataatgtatgtagt 39940562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 5246250 - 5246193
Alignment:
Q  36 tttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcac 94  Q
    |||||||||| ||||||||||||||||||||||| | | |||||| |||||||||||||    
T  5246250 tttttagattcattgaataaatgatgtatgtagtct-atttaatgaccacatacatcac 5246193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 39617315 - 39617369
Alignment:
Q  12 tcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||| | ||| |||||||||||||||||||||| | ||||||||||    
T  39617315 tcactattataagtaaaaaactactttttagatttattgaatgagtgatgtatgt 39617369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28038971 - 28038882
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacataca 90  Q
    |||| ||||| | ||||||||||| | ||||| |||||||||||| ||| | |||||||||||| ||||||| |||| || ||| |||||    
T  28038971 actccctccgattactattataagcaaaaatcaactttttagattcatttattaaatgatgtatttagtttatattattgaccaaataca 28038882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1409193 - 1409129
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    |||| ||||||||||||||||||| | ||||   ||||||||||| ||| |||||||||||||||    
T  1409193 actccctccggtcactattataagcaaaaattatctttttagattcattcaataaatgatgtatg 1409129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 5431342 - 5431402
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||  |||||||||||| ||| ||||||||| ||||||    
T  5431342 ctccggtcactattataagcaaaaattcactttttagattcattcaataaatgaagtatgt 5431402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 14214668 - 14214608
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | |||  |||||||||| || ||| ||||||||||||||||    
T  14214668 ctccggtcactattataagcaaaaacttactttttaggttcattcaataaatgatgtatgt 14214608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 15057658 - 15057718
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||| ||||||||||||| | ||| |||||||||||||| ||||||| | ||||||||||    
T  15057658 ctccgatcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgt 15057718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19580337 - 19580269
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||| ||||||||||||||||||  | || | || |||||||||| ||| |||||||||||||||||||    
T  19580337 actccctccggtcactattataaacaaaagtatattttttagattcattcaataaatgatgtatgtagt 19580269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 31008260 - 31008320
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | |||||||||||||||||  ||| ||| ||||||||||||    
T  31008260 ctccggtcactaatataagcaaaaatctactttttagatacatttaattaatgatgtatgt 31008320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 36163989 - 36164025
Alignment:
Q  36 tttttagatttattgaataaatgatgtatgtagttta 72  Q
    |||||||||||||| ||||||||||||||||||||||    
T  36163989 tttttagatttattcaataaatgatgtatgtagttta 36164025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 46906861 - 46906921
Alignment:
Q  5 tctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    |||||||||||||||||||| | |||||||  ||||||||| ||| | |||||||||||||    
T  46906861 tctccggtcactattataagcaaaaatctatattttagattcattcattaaatgatgtatg 46906921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 24981980 - 24981921
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||||||||| | ||||| || ||||||||| ||| | |||||||||||||    
T  24981980 ctccggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatg 24981921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 6735815 - 6735737
Alignment:
Q  28 aaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaa 106  Q
    ||||| ||||||||||||||||||||||||||| |||| |  ||| ||||  | |||||||||| | |||||| |||||    
T  6735815 aaatcaactttttagatttattgaataaatgatatatgcatcttatattatagaccacatacattatttattcaatgaa 6735737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 14891877 - 14891819
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||||||||||||||| | |||| ||  ||||||||||||  ||||||||||||||    
T  14891877 ctccggtcactattataagcaaaaatttaaattttagatttatccaataaatgatgtat 14891819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 19175587 - 19175649
Alignment:
Q  4 ctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||||| | || |  ||||||||| || ||| ||||||||||||||||    
T  19175587 ctctccggtcactattataagtaaaatttcactttttaggttcattcaataaatgatgtatgt 19175649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 46830010 - 46829924
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatca 93  Q
    ||||||||||||||| || | ||| |||| ||||||||||||| | ||||||||||| || ||||| | ||| | ||||||| ||||    
T  46830010 tccggtcactattattagcaaaaaactacattttagatttattcattaaatgatgtacgtggtttataataaagaccacatagatca 46829924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 47446769 - 47446707
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||||||||||||||||| | |||   |||||||| ||| ||| |||||||||||||||||||    
T  47446769 tccggtcactattataagtaaaaactcactttttaaattcattcaataaatgatgtatgtagt 47446707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 50308633 - 50308687
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||||||||||| | ||||| |||||||||||||||| | ||||| ||||||    
T  50308633 ggtcactattataagcaaaaatcaactttttagatttattcattaaattatgtat 50308687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 6156636 - 6156693
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||| ||||||||||||  | ||||| |||||||||||| ||| ||||||||||||||    
T  6156636 tccgatcactattataaacaaaaatcaactttttagattcattcaataaatgatgtat 6156693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 13288470 - 13288413
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||| | ||||  ||||| || ||||||| ||||||||||||||||    
T  13288470 cggtcactattataagcaaaaatgcactttataaatttattcaataaatgatgtatgt 13288413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13319963 - 13319898
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||| |||| |||||||||||||| | |||| ||||||||| | ||||| |||||||||| |||||    
T  13319963 actccctccagtcactattataagcaaaaatttactttttaaaattatttaataaatgatatatgt 13319898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 21909953 - 21909916
Alignment:
Q  33 tactttttagatttattgaataaatgatgtatgtagtt 70  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  21909953 tactttttagatttattcaattaatgatgtatgtagtt 21909916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 39619221 - 39619270
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgtagtttaaattaatggcc 83  Q
    ||||||||||||||||||||||||||||| | |||| || | ||||||||    
T  39619221 actttttagatttattgaataaatgatgtgtctagtctataataatggcc 39619270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 639800 - 639860
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||| |||||||||||  ||| ||| ||||||||||||    
T  639800 ctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgt 639860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 748680 - 748760
Alignment:
Q  36 tttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaaccttaaaaat 116  Q
    ||||||| || ||||||||||||||||||   || || ||||||||  |||||||||||| |||| ||||| || ||||||    
T  748680 tttttaggttcattgaataaatgatgtatacggtctatattaatggttacatacatcactcattcaatgaatctaaaaaat 748760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 8243494 - 8243438
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||| | || | || ||||||  |||||||||||||||||||||||    
T  8243494 ggtcactattataagtagaattttattttttaagtttattgaataaatgatgtatgt 8243438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 9675962 - 9676030
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||| ||||||||||||||||||| | ||||  ||||||||| || ||| ||||||| |||||| ||||    
T  9675962 actccctccggtcactattataagtaaaaattaactttttaggttcatttaataaataatgtatttagt 9676030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 25554572 - 25554604
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| ||||||||||||||||||||    
T  25554572 actttttagattcattgaataaatgatgtatgt 25554604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 33604130 - 33604070
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||| |||||||||||  ||| ||| ||||||||||||    
T  33604130 ctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgt 33604070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 37096209 - 37096177
Alignment:
Q  34 actttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| ||||||||||||||||||||    
T  37096209 actttttagattcattgaataaatgatgtatgt 37096177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 41040224 - 41040256
Alignment:
Q  33 tactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||| |||||||||||||||||||    
T  41040224 tactttttagattcattgaataaatgatgtatg 41040256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 48022596 - 48022656
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||| |||||||||||  ||| ||| ||||||||||||    
T  48022596 ctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgt 48022656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 52923324 - 52923384
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | || |  ||||||||| || ||| ||||||||||||||||    
T  52923324 ctccggtcactattataagcaaaatttcactttttaggttcattcaataaatgatgtatgt 52923384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 44587639 - 44587744
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattc 100  Q
    |||| ||||||||| ||||||||| | ||  ||| ||||||| || |||||||||||||||||||| || || ||| ||| |||||||||||||| ||||    
T  44587639 actccctccggtcattattataagcaaaatactattttttaggttcattgaataaatgatgtatgtggtctatattgatgaccacatacatcactcattc 44587738  T
Q  101 tatgaa 106  Q
     |||||    
T  44587739 aatgaa 44587744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23143630 - 23143567
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||| ||||||||||||||||||| | ||||| ||||||||| |||||| ||||||||||||||    
T  23143630 actccctccggtcactattataagcaaaaatcaactttttaggtttattcaataaatgatgtat 23143567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23555420 - 23555357
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||| ||||||||||||||||||| | ||||| ||||||||| |||||| ||||||||||||||    
T  23555420 actccctccggtcactattataagcaaaaatcaactttttaggtttattcaataaatgatgtat 23555357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 13333585 - 13333527
Alignment:
Q  7 tccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    |||||||||||||||||| | |||||||| ||||||||| ||||| |||||||||||||    
T  13333585 tccggtcactattataagcaaaaatctacattttagattcattgattaaatgatgtatg 13333527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 40363226 - 40363306
Alignment:
Q  12 tcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatc 92  Q
    ||||||||||||| | ||| ||||||||||| || ||||||||||||||||| ||  | || ||||||| |||||||||||    
T  40363226 tcactattataagcaaaaaactactttttaggttcattgaataaatgatgtacgtgatctatattaatgaccacatacatc 40363306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 2577670 - 2577777
Alignment:
Q  1 actctctccggtcactattataag-aataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttatt 99  Q
    ||||| |||||||||||||||||  || ||| ||| ||||||| || ||||||  |||||||||||| || || ||||||||| |||||||| ||| |||    
T  2577670 actctttccggtcactattataaacaaaaaaactattttttaggttcattgaacgaatgatgtatgtggtatatattaatggctacatacataactcatt 2577769  T
Q  100 ctatgaac 107  Q
    | ||||||    
T  2577770 caatgaac 2577777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 3098265 - 3098206
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||||||||| | |||||||| ||||||||| ||| | |||||||||||||    
T  3098265 ctccggtcactattataagcaaaaatctacattttagattcattcattaaatgatgtatg 3098206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 25270995 - 25270936
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||||||||| | |||||||| ||||||||| ||| | |||||||||||||    
T  25270995 ctccggtcactattataagcaaaaatctacattttagattcattcattaaatgatgtatg 25270936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 27331898 - 27331835
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||||||||| | ||||| || ||||||||| ||| ||| |||||||||||||||    
T  27331898 ctccggtcactattataagcaaaaatcaacattttagattcattcaattaatgatgtatgtagt 27331835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 44587778 - 44587671
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaacct 109  Q
    ||||||||||||||| | ||| |||||||||||||| ||||||| | |||||||||| ||    | ||  | |||||||||||| |||||| ||||||||    
T  44587778 ggtcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgtggtcatcaatatagaccacatacatcatttattcaatgaacct 44587679  T
Q  110 taaaaata 117  Q
     |||||||    
T  44587678 aaaaaata 44587671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 15119916 - 15119858
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    ||||||||||||||||||| | |||||||| ||||||||||||| | | ||||||||||    
T  15119916 ctccggtcactattataagcaaaaatctacattttagatttattcatttaatgatgtat 15119858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 41057025 - 41056968
Alignment:
Q  8 ccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||||||||||||||| | |||||||| ||||||||| ||| | |||||||||||||    
T  41057025 ccggtcactattataagcaaaaatctacattttagattcattcattaaatgatgtatg 41056968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 45472417 - 45472474
Alignment:
Q  12 tcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||| | |||| ||||||||| ||| ||| |||||||||||||||||||    
T  45472417 tcactattataagtaaaaatttactttttaaattcattcaataaatgatgtatgtagt 45472474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 5574249 - 5574189
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | |||||||||||||||||  ||| ||| ||||||||||||    
T  5574249 ctccggtcactaatataagcaaaaatctactttttagatacattcaattaatgatgtatgt 5574189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 38465790 - 38465850
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||||||| | ||||| || ||||||||| ||| | ||||||||||||||    
T  38465790 ctccggtcactattataagcaaaaatcaacattttagattaattcattaaatgatgtatgt 38465850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44274685 - 44274617
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    |||| |||||||||||  |||||| | ||||  |||||||||||| ||| |||||||||||||||||||    
T  44274685 actccctccggtcactgatataagcaaaaattcactttttagattcattcaataaatgatgtatgtagt 44274617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 25625848 - 25625907
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    ||||| ||| ||||||||||| || |||| ||||||| || |||||||||||||||||||    
T  25625848 ctccgatcattattataagaaaaactctattttttagtttcattgaataaatgatgtatg 25625907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 32630541 - 32630482
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagt 69  Q
    ||||||||||||||  | ||||| || ||||||||||||| | |||||||||||||||||    
T  32630541 ggtcactattataaataaaaatcaacattttagatttattcattaaatgatgtatgtagt 32630482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8996897 - 8996843
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataa 55  Q
    |||||||||||||||||||||||| | || |||||||| |||||  |||||||||    
T  8996897 actctctccggtcactattataagcaaaactctactttctagatacattgaataa 8996843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 20504244 - 20504302
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||||||||||| |||||  | ||||||||||||||||| |||| ||| ||||||||||    
T  20504244 ctccggtcactaatataaacaaaaatctactttttagatatattcaattaatgatgtat 20504302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 41824268 - 41824369
Alignment:
Q  12 tcactattataagaataaatctactttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaacctta 111  Q
    ||||||||||||| | ||||  | |||||||||| ||| ||||||| |||||||||||||| | ||  | |||||||||||| |||||  |||||||| |    
T  41824268 tcactattataagcaaaaattcattttttagattcattcaataaattatgtatgtagtttata-tatagaccacatacatcatttattgaatgaacctaa 41824366  T
Q  112 aaa 114  Q
    |||    
T  41824367 aaa 41824369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 31024175 - 31024232
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||||||| | ||||| || ||||||||| ||| | ||||||||||||||    
T  31024175 cggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgt 31024232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41824404 - 41824339
Alignment:
Q  1 actctctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||| |||||||||||| |||||| | ||||  ||||||||| || ||| ||||||||||||||||    
T  41824404 actccctccggtcactactataagtaaaaattgactttttaggttcattcaataaatgatgtatgt 41824339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 1961444 - 1961388
Alignment:
Q  10 ggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||||||| | ||||| || ||||||||| ||| | ||||||||||||||    
T  1961444 ggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgt 1961388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 6336698 - 6336662
Alignment:
Q  28 aaatctactttttagatttattgaataaatgatgtat 64  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  6336698 aaatctactttttagattcattcaataaatgatgtat 6336662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 17866288 - 17866216
Alignment:
Q  37 ttttagatttattgaataaatgatgtatgtagtttaaattaatggccacatacatcacttattctatgaacct 109  Q
    ||||||||| ||| ||||||| |||||||| ||||| | ||| | |||||||||||| |||||  ||||||||    
T  17866288 ttttagattcattcaataaattatgtatgttgtttacaataaagaccacatacatcatttattaaatgaacct 17866216  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20218690 - 20218627
Alignment:
Q  1 actctctccggtcactattataag-aataaatctactttttagatttattgaataaatgatgtat 64  Q
    |||| |||| |||||||||||||| || ||||| |||||||||||| ||||||||| ||||||||    
T  20218690 actccctcctgtcactattataagcaagaaatc-actttttagattcattgaataattgatgtat 20218627  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 21183466 - 21183406
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    ||||||||||| ||||||| | ||||| || ||||||||| ||| | ||||||||||||||    
T  21183466 ctccggtcactgttataagcaaaaatcaacattttagattcattcattaaatgatgtatgt 21183406  T

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Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 33284755 - 33284783
Alignment:
Q  36 tttttagatttattgaataaatgatgtat 64  Q
    |||||||||||||||||||||||||||||    
T  33284755 tttttagatttattgaataaatgatgtat 33284783  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 38594483 - 38594423
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||||| |||||||||  ||| ||| ||||||||||||    
T  38594483 ctccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtatgt 38594423  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 38598079 - 38598019
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | ||||||| |||||||||  ||| ||| ||||||||||||    
T  38598079 ctccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtatgt 38598019  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 45472548 - 45472484
Alignment:
Q  7 tccggtcactattataagaataaatctactttttaga-tttattgaataaatgatgtatgtagtt 70  Q
    |||||||||||||||||||| ||||  | ||||||||  ||||| ||||||| ||||||||||||    
T  45472548 tccggtcactattataagaaaaaattgattttttagagcttattcaataaataatgtatgtagtt 45472484  T

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Target: scaffold0113 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 40457 - 40513
Alignment:
Q  9 cggtcactattataagaataaatctactttttagatttattgaataaatgatgtatg 65  Q
    |||||||||||||||  | ||||| || ||||||||||||| | |||||||||||||    
T  40457 cggtcactattataaataaaaatcaacattttagatttattcattaaatgatgtatg 40513  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 120284 - 120224
Alignment:
Q  6 ctccggtcactattataagaataaatctactttttagatttattgaataaatgatgtatgt 66  Q
    |||||||||||| |||||| | |||| ||||||||||||  ||| ||| ||||||||||||    
T  120284 ctccggtcactaatataagcaaaaatttactttttagatacattcaattaatgatgtatgt 120224  T

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