View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9003_low_20 (Length: 456)
Name: NF9003_low_20
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Complemental strand, 11542594 - 11542161
Alignment:
| Q |
7 |
ggagaagcagagagtaagtgaatatcggtgtaatatgccgtataaagaagagagtgatgtgaaattgagaagtttggccgggcagatgagggaagcaggt |
106 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11542594 |
ggagaagaatagagtaagtgaatatcggtgtaatatgccgtataaagaagagagtgatgtgaaattgagaagtttgaccgggcagatgagggaagcaggt |
11542495 |
T |
|
| Q |
107 |
tatgttcctgatacgagatatgttctccatgacattgatgaggaggaaaaagaaaaggctttgcaatatcatagtgaacgtttggcaattgcttatggtc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
11542494 |
tatgttcctgatacgagatatgttctccatgacattgatgaagaggaaaaagaaaaggctttgcagtatcatagtgaatgtttggcaattgcttatggtc |
11542395 |
T |
|
| Q |
207 |
tcatcagtactccgccgaggactacgcttagaattatcaagaatctacgtatatgtggagactgtcacaatgctatcaaaatcatgtccaagattgttgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542394 |
tcatcagtactccgccgaggactacgcttagaattatcaagaatctacgtatatgtggagactgtcacaatgctatcaaaatcatgtccaagattgttgg |
11542295 |
T |
|
| Q |
307 |
aagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtagatac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11542294 |
aagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtagatac |
11542195 |
T |
|
| Q |
407 |
tctgatgatatattgctagattgtattttgtttg |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
11542194 |
tctgatgatatattgctagattgtattttgtttg |
11542161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Complemental strand, 34615139 - 34614706
Alignment:
| Q |
7 |
ggagaagcagagagtaagtgaatatcggtgtaatatgccgtataaagaagagagtgatgtgaaattgagaagtttggccgggcagatgagggaagcaggt |
106 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
34615139 |
ggagaagaatagagtaagtgaatatcggtgtaatatgccgtataaagaagagggtgatgtgaaattgagaggtttgaccgggcagatgagggaagcaggt |
34615040 |
T |
|
| Q |
107 |
tatgttcctgatacgagatatgttctccatgacattgatgaggaggaaaaagaaaaggctttgcaatatcatagtgaacgtttggcaattgcttatggtc |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
34615039 |
tatgttcctgatacgagatacgttctccatgacattgatgaggaggaaaaggaaaaggctttgcagtatcatagtgaacgtttggcaattgcttatggtc |
34614940 |
T |
|
| Q |
207 |
tcatcagtactccgccgaggactacgcttagaattatcaagaatctacgtatatgtggagactgtcacaatgctatcaaaatcatgtccaagattgttgg |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34614939 |
tcatcagtactccgccgaggactactcttagaattatcaagaatctacgtatatgtggagactgtcacaatgctatcaaaatcatgtccaagattgttgg |
34614840 |
T |
|
| Q |
307 |
aagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtagatac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34614839 |
aagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtagatac |
34614740 |
T |
|
| Q |
407 |
tctgatgatatattgctagattgtattttgtttg |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34614739 |
tctgatgatatattgctagattgtattttgtttg |
34614706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 34757675 - 34757289
Alignment:
| Q |
17 |
agagtaagtgaatatcggtgtaatatgccgtataaagaagagagtgatgtgaaattgagaagtttggccgggcagatgagggaagcaggttatgttcctg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
34757675 |
agagtaagtgaatatcggtgtaatatgccgtatgaagaagaggatgatgagaaattgagaggtttgaccgggcagatgagggaagcaggttatgttcctg |
34757576 |
T |
|
| Q |
117 |
atacgagatatgttctccatgacattgatgaggaggaaaaagaaaaggctttgcaatatcatagtgaacgtttggcaattgcttatggtctcatcagtac |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34757575 |
atacgagatacgttctccatgacattgatgaggaggaaaaagaaaaggctttgcagtatcatagtgaatgtttggcaattgcttatggtctcatcagtac |
34757476 |
T |
|
| Q |
217 |
tccgccgaggactacgcttagaattatcaagaatctacgtatatgtggagactgtcacaatgctatcaaaatcatgtccaagattgttggaagggagctc |
316 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34757475 |
tccgccgaggactactcttagaattatcaagaatctacgtatatgtggagactgtcacaatgctatcaaaatcatgtccaagattgttggaagggagctc |
34757376 |
T |
|
| Q |
317 |
attgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtaga |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34757375 |
attgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggtagtgttggtaaaaatgtaga |
34757289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 34742579 - 34742222
Alignment:
| Q |
7 |
ggagaagcagagagtaagtgaatatcggtgtaatatgccgtataaa-gaagagagtgatgtgaaattgagaagtttggccgggcagatgagggaagcagg |
105 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||| | |||||||| ||||||||||| |
|
|
| T |
34742579 |
ggagaagaatagagtaagtgaatatcggtgtaatatgccgtataaaagaagacaatgatgtgaaattgagaggtttgactgggcagattagggaagcagg |
34742480 |
T |
|
| Q |
106 |
ttatgttcctgatacgagatatgttctccatgacattgatgaggaggaaaaagaaaaggctttgcaatatcatagtgaacgtttggcaattgcttatggt |
205 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||||||||||||||||| || || || |||| ||||||||| || ||||||||||| ||||||||| |
|
|
| T |
34742479 |
ttatgttcctgatacgagatacgtactccatgatattgatgaggaggaaaaggagaaagccttgcgatatcatagcgagcgtttggcaatagcttatggt |
34742380 |
T |
|
| Q |
206 |
ctcatcagtactccgccgaggactacgcttagaattatcaagaatctacgtatatgtggagactgtcacaatgctatcaaaatcatgtccaagattgttg |
305 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |
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|
| T |
34742379 |
ctcatcagtactccgccaaggactatgcttagaattatcaagaatctacgtatatgtggagactgtcacaatgctatcaaattcatgtctaagattgtgg |
34742280 |
T |
|
| Q |
306 |
gaagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatg |
363 |
Q |
| |
|
||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34742279 |
gaatgaaactcattgtgagggacaacaagagatttcatcatttcaaagatggaaaatg |
34742222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 428
Target Start/End: Complemental strand, 34757287 - 34757254
Alignment:
| Q |
395 |
aaatgtagatactctgatgatatattgctagatt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34757287 |
aaatgtagatactctgatgatatattgctagatt |
34757254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 107 - 383
Target Start/End: Complemental strand, 33779271 - 33778995
Alignment:
| Q |
107 |
tatgttcctgatacgagatatgttctccatgacattgatgaggaggaaaaagaaaaggctttgcaatatcatagtgaacgtttggcaattgcttatggtc |
206 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| |||| | ||| || |||| |||| || || ||||| ||| | |||||||| ||||||| |
|
|
| T |
33779271 |
tatgttcctgatacaagatatgttcttcatgacattgatcaggaagcaaaggagcaggccttgctctaccacagtgagcgtctagcaattgcctatggtc |
33779172 |
T |
|
| Q |
207 |
tcatcagtactccgccgaggactacgcttagaattatcaagaatctacgtatatgtggagactgtcacaatgctatcaaaatcatgtccaagattgttgg |
306 |
Q |
| |
|
| || |||||||| || || || | ||||| ||||||||||| || ||| | ||||| |||||||||||||| ||||| |||||||| | |||||| || |
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|
| T |
33779171 |
ttattagtactcctcctagaacacctcttaggattatcaagaaccttcgtgtctgtggtgactgtcacaatgccatcaagatcatgtctaggattgtagg |
33779072 |
T |
|
| Q |
307 |
aagggagctcattgtgagggacaacaagagattccatcatttcaaagatggaaaatgctcttgtggagattattggt |
383 |
Q |
| |
|
||||| || ||||| || || ||||| || || ||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
33779071 |
gagggaactgattgttagagataacaaaaggtttcatcatttcaaggatggaaaatgctcttgtggggattactggt |
33778995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 17992990 - 17993032
Alignment:
| Q |
344 |
catttcaaagatggaaaatgctcttgtggagattattggtagt |
386 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
17992990 |
catttcaaagatgggaaatgctcttgtggtgattactggtagt |
17993032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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