View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_24 (Length: 445)
Name: NF9003_low_24
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 25656830 - 25657257
Alignment:
| Q |
18 |
acaggaatgttctatggtttgaaattttacaatgatctaataatggaagctgggtctaaagggaatgtacaatctgaggtgcttatgaagaaggacaaga |
117 |
Q |
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| T |
25656830 |
acaggaatgttctatggtttgaaattttacaatgatctaataatggaagctgggtctaaagggaatgtacaatctgaggtgcttatgaagaaggacaaga |
25656929 |
T |
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| Q |
118 |
acacatttacactaaagcaaggatgggcttttcctagaagggtatactttaatggtgatgaatgtatgcttccacctcctgattcataccctttcttgcc |
217 |
Q |
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| T |
25656930 |
acacatttacactaaagcaaggatgggcttttcctagaagggtatactttaatggtgatgaatgtatgcttccacctcctgattcataccctttcttgcc |
25657029 |
T |
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| Q |
218 |
aaattctgctcgaaggctaccaacgagttttgtaacgatgacaacctatgtgattgttgcatcatttttcatttggttttgagtcttttctgatgtatat |
317 |
Q |
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| T |
25657030 |
aaattctgctcgaaggctaccaacgagttttgtaacgatgacaacctatgtgattgttgcatcatttttcatttggttttgagtcttttccgatgtatat |
25657129 |
T |
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| Q |
318 |
ataagggatgaaaattagtttaccgagagtgtttgattttgattggatatatgcaacatggagtttcatgagaccaccaatgcataatttctcgaatcgt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |
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| T |
25657130 |
ataagggatgaaaattagtttaccgagagtgtttgattttgattgaatatatgcaacatggagtttcatgagaccactaatgcgtaatttctcaaatcgt |
25657229 |
T |
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| Q |
418 |
taatatttgttttcttgttttactgaac |
445 |
Q |
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| T |
25657230 |
taatatttgttttcttgttttactgaac |
25657257 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 5552976 - 5552897
Alignment:
| Q |
132 |
aagcaaggatgggcttttcctagaagggtatactttaatggtgatgaatgtatgcttccacctcctgattcatacccttt |
211 |
Q |
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| T |
5552976 |
aagcaaggatgggcatttcctcacaaggtttactttaatggtgatgaatgcatgcttcctccacctgatacatacccttt |
5552897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 5010169 - 5010100
Alignment:
| Q |
112 |
acaagaacacatttacactaaagcaaggatgggcttttcctagaagggtatactttaatggtgatgaatg |
181 |
Q |
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| T |
5010169 |
acaagaaaacattcacactcaaccaaggatgggcatttcctaggagagtttacttcaatggtgaagaatg |
5010100 |
T |
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