View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9003_low_26 (Length: 442)

Name: NF9003_low_26
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9003_low_26
NF9003_low_26
[»] chr5 (8 HSPs)
chr5 (1-423)||(37842616-37843019)
chr5 (6-199)||(28089491-28089685)
chr5 (1-202)||(37831293-37831496)
chr5 (5-202)||(37837001-37837200)
chr5 (361-423)||(37837332-37837394)
chr5 (1-202)||(37850376-37850573)
chr5 (351-420)||(37844814-37844883)
chr5 (346-423)||(37850657-37850734)
[»] chr7 (2 HSPs)
chr7 (5-199)||(36865748-36865944)
chr7 (346-407)||(36866019-36866080)
[»] chr2 (1 HSPs)
chr2 (371-422)||(45561900-45561951)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 37842616 - 37843019
Alignment:
Q  1 tgaagttattgaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgt-- 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  37842616 tgaagttattgaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgtgt 37842715  T
Q  99 ctccaaatcaaccgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataatt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37842716 ctccaaatcaaccgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataatt 37842815  T
Q  199 cgaaggcgtttccatagaatggaatcagatacgaaagatctaaagcaatggtatgatattcatagaggagctggaaggattggagttggatattctcacg 298  Q
    | ||||||||||| ||||| ||||||||||||| ||||||||||||||||||   |||||  ||| |||||||||  |||||||    ||||| || |||    
T  37842816 caaaggcgtttccttagaaaggaatcagatacggaagatctaaagcaatggt---atattggtaggggagctggattgattggaaccagatatgcttacg 37842912  T
Q  299 agttcaacatctcaggtgaagagactccaaccttccttcagaaaccacctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaata 398  Q
    | |||||| | ||||||||||                  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37842913 aattcaacgtatcaggtgaag------------------ataaaccacctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaata 37842994  T
Q  399 tattattggaagaggagcacatggt 423  Q
    |||||||||||||||||||||||||    
T  37842995 tattattggaagaggagcacatggt 37843019  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 28089491 - 28089685
Alignment:
Q  6 ttattgaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgtctc--ca 103  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||| ||  ||    
T  28089491 ttattgaattcctcaccatcatcattcatgggcaatcctctcatatgttttagttgttgaa-ttgcattaaaactagttatgtaaatccatgtgtctaca 28089589  T
Q  104 aatcaaccgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataattc 199  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||| ||||||||||    
T  28089590 aatcaaccgatcataaagttatcggtaatgttcaaattgtgatgatagaacttggatcctcaatattgatttctgatgtgctggtgataataattc 28089685  T

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Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 37831293 - 37831496
Alignment:
Q  1 tgaagttattgaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatcca--tgt 98  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||  |||    
T  37831293 tgaagttactgaattcctcaccatcatcattcatgggtagtcctctcctatgtgttagttgtttgagttgcattgaaactagttatgtaaatccatgtgt 37831392  T
Q  99 ctccaaatcaaccgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataatt 198  Q
    || ||| ||||| ||||||||||||||| ||||||||||||||||| |||| ||| |||||||||| ||||| ||||||| | || || ||||||| |||    
T  37831393 ctacaagtcaactgatcacaaaggtatcggtaatgttcaaattgtgttgatagaacttggatcctcaatatttatttctgctctgatgctaataatgatt 37831492  T
Q  199 cgaa 202  Q
    ||||    
T  37831493 cgaa 37831496  T

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Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 37837001 - 37837200
Alignment:
Q  5 gttattgaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatcca--tgtctcc 102  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| | |||||||| ||||||| |||||||||||  ||||| |    
T  37837001 gttattgaattcctcaccatcatcattcatgggtaatcctttcctatgtgtaagttgtttgaattgcattataactagtaatgtaaatccatgtgtctac 37837100  T
Q  103 aaatcaaccgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataattcgaa 202  Q
    |||||||| ||||| |||||||||||| ||||||||||||| ||||| | | |||||||||| ||||||||||||| |||| |||| |||||| ||||||    
T  37837101 aaatcaactgatcataaaggtatcagttatgttcaaattgtaatgatagtacttggatcctcaatattgatttctgctgtgatggtgataatatttcgaa 37837200  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 37837332 - 37837394
Alignment:
Q  361 ctagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggt 423  Q
    ||||| ||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37837332 ctagttttggaggctacagagaacctaaatgatcagtatattattggaagaggagcacatggt 37837394  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 37850376 - 37850573
Alignment:
Q  1 tgaagttattgaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatgtct 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||      ||||||  |||||||||||| ||  |||||||||||  ||| |    
T  37850376 tgaatttattgaattcctcaccatcatcattcatgggtaatcctctcctat------gttgttcgagttgcattaaatctgtttatgtaaatctctgtgt 37850469  T
Q  101 c--caaatcaaccgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataatt 198  Q
    |  ||||||||| | ||||| ||| |||||| |  || ||||||||| ||| | | |||||||||| ||||  || |||||    ||| |||||||||||    
T  37850470 cgacaaatcaactggtcacatagggatcagtgaacttaaaattgtgacgatagtacttggatcctcgatatgtatatctgtaccactgctaataataatt 37850569  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 37844814 - 37844883
Alignment:
Q  351 ccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacat 420  Q
    ||||||| | ||||| ||| |||||||||||||||||| |||||| ||||||||||| || |||||||||    
T  37844814 ccttcaggacctagttttggaggctacagagaacctaaatgatcactatattattggcaggggagcacat 37844883  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 423
Target Start/End: Original strand, 37850657 - 37850734
Alignment:
Q  346 cctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggt 423  Q
    ||||||||||| || | ||||||| ||||||| |||||||||| |||||  |||||||||||  ||||||||||||||    
T  37850657 cctgaccttcataagcaagtgttggaggctactgagaacctaaatgatcggtatattattggtggaggagcacatggt 37850734  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 36865748 - 36865944
Alignment:
Q  5 gttattgaattcctcaccatcatcattcatgggtaatcctctcatatgtgtcagttgtttaagttgcattaaaactagttatgtaaatccatg--tctcc 102  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||| || ||||| | |||| |||||||||||| | ||||||||||  ||| |    
T  36865748 gttattgaattcctcaccgtcatcgttcatgggtaatcctctcctatgtgttagatgtttgaattgctttaaaactagttttataaatccatgtatctac 36865847  T
Q  103 aaatcaaccgatcacaaaggtatcagtaatgttcaaattgtgatgattgaaattggatcctctatattgatttctgttgtgctggtaataataattc 199  Q
    ||| |||| |||||||||||||||| ||||||||||||||||||||| ||| ||||| |||| |||||  |||||| ||||  ||| ||||||||||    
T  36865848 aaaccaactgatcacaaaggtatcattaatgttcaaattgtgatgatagaacttggaccctcaatatttgtttctggtgtggcggtgataataattc 36865944  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 36866019 - 36866080
Alignment:
Q  346 cctgaccttcagaaactagtgttgcaggctacagagaacctaagtgatcaatatattattgg 407  Q
    |||||||||||  | | ||||||| | |||||||||||||||| ||||||||||||||||||    
T  36866019 cctgaccttcatgatcaagtgttggaagctacagagaacctaaatgatcaatatattattgg 36866080  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 45561900 - 45561951
Alignment:
Q  371 aggctacagagaacctaagtgatcaatatattattggaagaggagcacatgg 422  Q
    ||||||||  ||||||||||||||  |||||||||||||||||||| |||||    
T  45561900 aggctacatcgaacctaagtgatcggtatattattggaagaggagcccatgg 45561951  T

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