View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_27 (Length: 425)
Name: NF9003_low_27
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 47476899 - 47477289
Alignment:
| Q |
19 |
gtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagttt |
118 |
Q |
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| T |
47476899 |
gtaaagctgtgataggatgaacagcatgtgctctccttattgtatcggggctggcttcagatagtccaatatatttaacttttccctcttccaccagttt |
47476998 |
T |
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| Q |
119 |
cttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccct |
218 |
Q |
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| T |
47476999 |
cttaagttcacctacctatagcacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccct |
47477098 |
T |
|
| Q |
219 |
acaagaccagcttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatgtatatgtaacgtgttgccg |
318 |
Q |
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| T |
47477099 |
acaagaccagtttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatgtatatgtaacttgttgccg |
47477198 |
T |
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| Q |
319 |
tgtactatgctcaaatcaaatactagttttacataggaagaaatatccttaactgtatcctcaataggcacggttgtatcgactctgtgct |
409 |
Q |
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| T |
47477199 |
tgtactatgctcaaatcaaatactagttttacataggaagaaatatccttaactgtatcctcaataggcacggttgtatcgactctgtgct |
47477289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 27 - 292
Target Start/End: Original strand, 47473609 - 47473874
Alignment:
| Q |
27 |
gtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagtt |
126 |
Q |
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| T |
47473609 |
gtgatgggatgaacagcatgcgctctccttattgtatcagggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagtt |
47473708 |
T |
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| Q |
127 |
cacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctacaagacc |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
47473709 |
cacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctagaaaacc |
47473808 |
T |
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| Q |
227 |
agcttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatat |
292 |
Q |
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| T |
47473809 |
agcttatcaaggtatgggagtctcccatttataatttgggactctcaacaaataatgtaagcatat |
47473874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 47486345 - 47486483
Alignment:
| Q |
48 |
gctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctacctataacacaacaa |
147 |
Q |
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||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||| |||||||||| ||| ||||||||||||||| ||| | || || |
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| T |
47486345 |
gctctccttattgtatctgggctagcttcagatagccctatatacttcacttttccttcttccaccaacttcataagttcacctacctgtaatagaagaa |
47486444 |
T |
|
| Q |
148 |
acttgttaacaacacatctagtgaaataagccaaataat |
186 |
Q |
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| T |
47486445 |
acttgttaacaatgcatctagtgtaataagtcagataat |
47486483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 47473898 - 47473931
Alignment:
| Q |
352 |
taggaagaaatatccttaactgtatcctcaatag |
385 |
Q |
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| T |
47473898 |
taggaagaaatatccttaactgtatcctcaatag |
47473931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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