View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_29 (Length: 397)
Name: NF9003_low_29
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_29 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 27895541 - 27895921
Alignment:
| Q |
1 |
cactcacttgcttgtttgctaatatcaaaagaggtgctcctttgagatcctcatgtcgaagcaccttttctggtaaatagatcagttattaaattatcac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27895541 |
cactcacttgcttgtttgctaatatcaaaagaggtgctcctttgagatcctcatgtcgaagcaccttttcaggtaaatagatcagttattaaattatcac |
27895640 |
T |
|
| Q |
101 |
tgtgttgtttaattttaacatatctagtagtactattgcaaacttgcaactgcaagccaactccttaaagaagtatatatgtagttatttacaaatacta |
200 |
Q |
| |
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|||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27895641 |
tgtgctgtttaatttcaacatatctagt---actattgcaaacttgcaactgcaagccaactccttaaagaagtatatatttagttatttacaaatacta |
27895737 |
T |
|
| Q |
201 |
aaatcaagtctcactaaccaagtgcagactaagttcatgttgaaggataagatagtataaacacagt-aaaaaaggtggaaacttgaaagatgctatcgc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27895738 |
aaatcaagtctcactaaccaagtgcagactaagttcatgttgaaggataagatagtataaacacagtcaaaaaaggtggaaacttgaaagatgctatcgc |
27895837 |
T |
|
| Q |
300 |
taatatattaatcttgatgtacaatgctgacatgaatagagaaagaacatttcaaatatcagttaataatatctagaagtttgt |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
27895838 |
taatatattaatcttgatgtacaatgctgacatgaatagagaaagaacatttcaaatatcacttaataatatctaaaagtttgt |
27895921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 9142981 - 9143029
Alignment:
| Q |
182 |
tagttatttacaaatactaaaatcaagtctcactaaccaagtgcagact |
230 |
Q |
| |
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|||||||||| ||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
9142981 |
tagttatttataaatagtaaaatcatgtctcactaaccaattgcagact |
9143029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 7628160 - 7628385
Alignment:
| Q |
2 |
actcacttgcttgtttgctaatatcaaaagaggtgctcctttgagatcctcatgtcgaagcaccttttctggtaaatagatcagttattaaattatcact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
7628160 |
actcacttgcttgtttgctaatatcaaaagaggggctcctttgagatcctcatgtcgaagcaccttttctggtaaacagatcggttattaaattatcact |
7628259 |
T |
|
| Q |
102 |
gtgttgtttaattttaacatatctagtagtactattgcaaacttgcaactgcaagccaactccttaaagaagtatatatgtagttatttacaaatactaa |
201 |
Q |
| |
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||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7628260 |
gtgctgttcaatttcaacatatc---tagtactattgcaaacttgcaactgcaagccaactccttaaagaagtatatatttagttatttacaaatactaa |
7628356 |
T |
|
| Q |
202 |
aatcaagtctcactaaccaagtgcagact |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
7628357 |
aatcaagtctcactaaccaagtgcagact |
7628385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 12777164 - 12777212
Alignment:
| Q |
182 |
tagttatttacaaatactaaaatcaagtctcactaaccaagtgcagact |
230 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
12777164 |
tagttatttataaatactaaaatcatgtctcactaaccaagtgcagact |
12777212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 30014821 - 30014869
Alignment:
| Q |
182 |
tagttatttacaaatactaaaatcaagtctcactaaccaagtgcagact |
230 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
30014821 |
tagttatttataaatactaaaatcatgtctcactaaccaagtgtagact |
30014869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 30073918 - 30073966
Alignment:
| Q |
182 |
tagttatttacaaatactaaaatcaagtctcactaaccaagtgcagact |
230 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||||||||||||||| |
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|
| T |
30073918 |
tagttatttataaatactaaaaccatgtctcactaaccaagtgcagact |
30073966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 7236 - 7188
Alignment:
| Q |
182 |
tagttatttacaaatactaaaatcaagtctcactaaccaagtgcagact |
230 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
7236 |
tagttatttataaatagtaaaatcatgtctcactaaccaattgcagact |
7188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 17054134 - 17054086
Alignment:
| Q |
182 |
tagttatttacaaatactaaaatcaagtctcactaaccaagtgcagact |
230 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
17054134 |
tagttatttataaatagtaaaatcatgtctcactaaccaattgcagact |
17054086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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