View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_31 (Length: 390)
Name: NF9003_low_31
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 23439645 - 23440021
Alignment:
| Q |
1 |
tcactaacttcttttttgcttaggttgtccatcctattcatgatcaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggtta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
23439645 |
tcactaacttcttttttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaag---ctgaaggaagagtttggtta |
23439741 |
T |
|
| Q |
101 |
gcacatagcatttcaaactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacag------taccttggacttttg |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
23439742 |
gcacatagcatttcaaactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagttccttggacttttg |
23439841 |
T |
|
| Q |
195 |
agcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagttcgaaatctaaaggtgtaacatctcttatcatataatagtagacaact |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
23439842 |
agcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgtaacatctcttatcatataattgtagacaact |
23439941 |
T |
|
| Q |
295 |
ttgctttatttttgtgtttatttatggagattaattgtgatattttttcttgaaacaggtaaaaaagatgataatccatg |
374 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23439942 |
ttgctttatttttgtgtttaattatggggattaattgtgatattttttcttgaaacaggtaaaaaagatgataatccatg |
23440021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 8673249 - 8672961
Alignment:
| Q |
1 |
tcactaacttcttttttgcttaggttgtccatcctattcatgatcaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggtta |
100 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8673249 |
tcactaacttctttgttgcttaggttgtccatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggatgaagagtttggtta |
8673150 |
T |
|
| Q |
101 |
gcacatagcatttcaaactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattac------agtaccttggacttttg |
194 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8673149 |
gcacatagcatttcaaactttctagattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagtaccttggacttttg |
8673050 |
T |
|
| Q |
195 |
agcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagttcgaaatctaaaggtgtaacatctcttatcatataat |
283 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
8673049 |
agcagaagcttggtgaagcactatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgaaacatctcttatcatataat |
8672961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 8719542 - 8719258
Alignment:
| Q |
1 |
tcactaacttcttttttgcttaggttgtccatcctattcatgatcaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggtta |
100 |
Q |
| |
|
|||||||||||||| || |||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719542 |
tcactaacttctttgtttcttaggttattcatcctattcatgaccaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggtta |
8719443 |
T |
|
| Q |
101 |
gcacatagcatttcaaactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattac------agtaccttggacttttg |
194 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
8719442 |
gcacatagcatttcaaactttctagattaat----tcatcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtacctttgacttttg |
8719347 |
T |
|
| Q |
195 |
agcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagttcgaaatctaaaggtgtaacatctcttatcatataat |
283 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
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| T |
8719346 |
agcagaaacttggtgaagcagtatttatacctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataat |
8719258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 8591706 - 8591421
Alignment:
| Q |
1 |
tcactaacttcttttttgcttaggttgtccatcctattcatgatcaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggtta |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |
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| T |
8591706 |
tcactaacttctttgttgcttaggttattcatcctattcatgaccaatgtttttatttgacttttgaccataagaagaagctggagaaagaatttggtta |
8591607 |
T |
|
| Q |
101 |
gcacatagcatttcaaactttctatattaattaaatcatcatgtgactagttatttacaagaatc-ttaatcaattac------agtaccttggactttt |
193 |
Q |
| |
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|||| ||||||||||||||||||| ||||| |||||| | |||||||||||| ||||| |||||||||||| |||||||| ||||||| |
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| T |
8591606 |
gcacgtagcatttcaaactttctagcttaat----gcatcatacaattagttatttacatgaatctttaatcaattacaggtgtagtacctttgactttt |
8591511 |
T |
|
| Q |
194 |
gagcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagttcgaaatctaaaggtgtaacatctcttatcatataat |
283 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
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| T |
8591510 |
gagcagaaacttggtgaagcagtatttatacttgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataat |
8591421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 8591106 - 8591030
Alignment:
| Q |
294 |
tttgctttatttttgtgtttatttatggagattaattgtgatattttttcttgaaacaggtaaaaaagatgataatc |
370 |
Q |
| |
|
|||||||| ||||||||||||||||| | | |||||||||||| ||||| || ||||| ||||||| ||||||||| |
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| T |
8591106 |
tttgctttgtttttgtgtttatttatcgggtttaattgtgatacttttttatggaacagttaaaaaatatgataatc |
8591030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 374
Target Start/End: Complemental strand, 8718922 - 8718893
Alignment:
| Q |
345 |
tgaaacaggtaaaaaagatgataatccatg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
8718922 |
tgaaacaggtaaaaaagatgataatccatg |
8718893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 8718962 - 8718921
Alignment:
| Q |
279 |
ataatagtagacaactttgctttatttttgtgtttatttatg |
320 |
Q |
| |
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||||| |||||||||||||||| || |||||||||||||||| |
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| T |
8718962 |
ataattgtagacaactttgcttaatatttgtgtttatttatg |
8718921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 55410343 - 55410251
Alignment:
| Q |
9 |
ttcttttttgcttaggttgtccatcctattcatgatcaatgtttttatttgacttttgagcataagaagaagctggaggaagagtttggttag |
101 |
Q |
| |
|
|||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| ||| || |||| |||||||||||| |
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| T |
55410343 |
ttctttgttggttaggttgtacatccaattcatgaccaatgtttttatttgactttggagcacaagaataagttgaaggaggagtttggttag |
55410251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 55410166 - 55410105
Alignment:
| Q |
185 |
tggacttttgagcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagt |
246 |
Q |
| |
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|||||||||||||| || ||||| || ||||||||||| |||||||||||||| || ||||| |
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| T |
55410166 |
tggacttttgagcaaaaacttggggaggcagtatttattcctgctggatgcccacatcaagt |
55410105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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