View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_34 (Length: 353)
Name: NF9003_low_34
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 43100845 - 43101130
Alignment:
| Q |
1 |
cttgaccatgacactcatgaggtataacaggttgaaactgttgattgaacctatggtaacaataggatgcaatgtgcccaaactcaaaacagacctgaca |
100 |
Q |
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| T |
43100845 |
cttgaccatgacactcatgaggtatagcaggttgaaactgttgattgaacctatggtaacaataggatgcaatgtgcccaaactcaaaacagacctgaca |
43100944 |
T |
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| Q |
101 |
ctgaatattgccaaaacgtcctcctccatgaccacgacatgaattaggataaccagaacctgaaggagtagattcagaagagggaggcacaatttgggat |
200 |
Q |
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| T |
43100945 |
ctgaatattgccaaaacgtcctcctccacgaccacgacctgaattaggataaccagaacctgaaggagtagattcagaagagtgaggcacaatttgggat |
43101044 |
T |
|
| Q |
201 |
acagacatgtcaccagcagaaggtgcaggcgtgagattaaccgacactgaatcagtgcttgcagctttctttaacttttgaagatg |
286 |
Q |
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| T |
43101045 |
acagacatgtcaccagcagaaggtgcaggcgtgagattaaccgacactgaatcagtgcttgcagctttctttaacttttgaagatg |
43101130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 43107573 - 43107618
Alignment:
| Q |
286 |
gaaggagaatgtgaagagaaaggaaaggaaaaggtttcattgttgtt |
332 |
Q |
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| T |
43107573 |
gaaggagaatgtgaagag-aaggaaaagtaaaggtttcattgttgtt |
43107618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 13310622 - 13310905
Alignment:
| Q |
1 |
cttgaccatgacactcatgaggtataacaggttgaaactgttgattgaacctatggtaacaataggatgcaatgtgcccaaactcaaaacagacctgaca |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
13310622 |
cttgaccatgacactcacgaggtataacaggttgaaactgttgattgaacctatggtaacaatagaatgcaatgtgcccaaacttaaaacagacctgaca |
13310721 |
T |
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| Q |
101 |
ctgaatattgccaaaacgtcctcctccatgaccacgacatgaattaggataaccagaacctgaaggagtagattcagaagagggaggcacaatttgggat |
200 |
Q |
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|||||||||||||||||||||||||||| | || || |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13310722 |
ctgaatattgccaaaacgtcctcctccactgctacaacctgaattaggatagccagaacctgaaggagtagattcagaagagggaggcacagtttgggat |
13310821 |
T |
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| Q |
201 |
acagacatgtcaccagcagaaggtgcaggcgtgagattaaccgacactgaatcagtgcttgcagctttctttaacttttgaaga |
284 |
Q |
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| T |
13310822 |
acagacatgtcacccgtagaaggtgcagatgtgagattaatcgacactgaatcagtgcttgcagctttcttgaacttttgaaga |
13310905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 13316173 - 13316218
Alignment:
| Q |
286 |
gaaggagaatgtgaagagaaaggaaaggaaaaggtttcattgttgtt |
332 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
13316173 |
gaaggagaatgtgaagagaaa-gaaaagaaaaggtttcattgttgtt |
13316218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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