View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_36 (Length: 352)
Name: NF9003_low_36
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 50243540 - 50243203
Alignment:
| Q |
1 |
ccaccaactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcaccta |
100 |
Q |
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| T |
50243540 |
ccaccaactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcaccta |
50243441 |
T |
|
| Q |
101 |
atctcagaaagnnnnnnnngttaactttttcattaaacaaagacatatttcaaaacnnnnnnnnnn---gaaattcacatagtatttcgttgtctgtcac |
197 |
Q |
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| T |
50243440 |
atctcagaaagaaaaaaaagttaactttttcattaaacaaagacat--ttcaaaaaaaaaaaaaagaaagaaattcacatagtatttcgttgtctgtcac |
50243343 |
T |
|
| Q |
198 |
aacaataataataagtaacaactatatcgccccgacacttgagattgaaagcatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacac |
297 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243342 |
aacaataataataagtaacaactatatcggcccgacacttgagattgaaaacatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacac |
50243243 |
T |
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| Q |
298 |
cgacatagtcattttatattggtagttgaatagaatagat |
337 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
50243242 |
cgacatagtcattttatattggtagttgaatagaatagat |
50243203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 3963719 - 3963755
Alignment:
| Q |
231 |
gacacttgagattgaaagcatgttcaatgtctaacat |
267 |
Q |
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||||||| |||||||| |||||||||||||||||||| |
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| T |
3963719 |
gacactttagattgaaggcatgttcaatgtctaacat |
3963755 |
T |
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