View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9003_low_37 (Length: 343)

Name: NF9003_low_37
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9003_low_37
NF9003_low_37
[»] chr3 (4 HSPs)
chr3 (18-306)||(42084872-42085165)
chr3 (205-269)||(21127742-21127807)
chr3 (205-269)||(43291871-43291936)
chr3 (197-277)||(34935729-34935809)
[»] chr5 (4 HSPs)
chr5 (197-285)||(12974244-12974332)
chr5 (195-278)||(40579681-40579764)
chr5 (224-278)||(38274991-38275045)
chr5 (205-269)||(17537469-17537537)
[»] chr8 (1 HSPs)
chr8 (196-278)||(33802582-33802664)
[»] chr1 (6 HSPs)
chr1 (196-278)||(47490277-47490359)
chr1 (197-278)||(25948200-25948281)
chr1 (194-280)||(5298749-5298835)
chr1 (205-269)||(2736182-2736247)
chr1 (205-269)||(39959850-39959915)
chr1 (205-269)||(1076197-1076262)
[»] chr7 (10 HSPs)
chr7 (197-277)||(42617403-42617483)
chr7 (205-269)||(28545504-28545569)
chr7 (205-269)||(28549919-28549984)
chr7 (205-269)||(28556087-28556152)
chr7 (205-269)||(47958511-47958576)
chr7 (205-269)||(48253863-48253928)
chr7 (205-269)||(24142897-24142962)
chr7 (205-258)||(36977679-36977732)
chr7 (206-269)||(2415883-2415947)
chr7 (205-250)||(46961385-46961430)
[»] scaffold0648 (1 HSPs)
scaffold0648 (197-278)||(7745-7826)
[»] chr4 (7 HSPs)
chr4 (197-278)||(43930110-43930191)
chr4 (205-269)||(33075804-33075869)
chr4 (206-269)||(55899070-55899134)
chr4 (205-269)||(228867-228935)
chr4 (205-269)||(240412-240480)
chr4 (209-259)||(42678844-42678894)
chr4 (205-269)||(47819298-47819366)
[»] chr2 (1 HSPs)
chr2 (205-269)||(36011894-36011959)
[»] chr6 (1 HSPs)
chr6 (206-269)||(30809870-30809934)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 42084872 - 42085165
Alignment:
18 tgaggaaccaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttggtagttaattcgttgtgtggt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42084872 tgaggaacaaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttggtagttaattcgttgtgtggt 42084971  T
118 ggtaactaactgttatggatcagttttgtcgatt----aagaaaatagtttaatattatgaataagaaaatgnnnnnnntaattgacagctgtgggattt 213  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
42084972 ggtaactaactgttatggatcagttttgtcgattaagaaagaaaatagtttaatattatgaataagaaaatgaaaaaaataattgacagctgtgggattt 42085071  T
214 gaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgctgattat-ttgtctgatcttttatac 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||    
42085072 gaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgctgattatgtcgtctgatattttatac 42085165  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 21127742 - 21127807
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
21127742 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 21127807  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 43291871 - 43291936
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
43291871 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 43291936  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 34935809 - 34935729
Alignment:
197 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 277  Q
    |||| |||||| |||||||||||||||||||||  ||| |||||||||||||  ||||||||||||| |||||||| ||||    
34935809 tgacggctgtgagatttgaacccacgccctttcaaaccggagcctaaatctgatgccttagaccacttggccaaaccgtct 34935729  T

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Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 12974332 - 12974244
Alignment:
197 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgctgat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
12974332 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgttgat 12974244  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 40579764 - 40579681
Alignment:
195 attgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40579764 attgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 40579681  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 38274991 - 38275045
Alignment:
224 cctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 278  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
38274991 cctttcggaccagagcctaaatctggcgccgtagaccactcggccaaactgtctt 38275045  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 17537537 - 17537469
Alignment:
205 gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca 269  Q
    ||||||||||||||||||||||  ||||  ||||||| | | | |||||||||||||||||||||||||    
17537537 gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca 17537469  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 33802582 - 33802664
Alignment:
196 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33802582 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 33802664  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 47490277 - 47490359
Alignment:
196 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47490277 ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 47490359  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 25948281 - 25948200
Alignment:
197 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25948281 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 25948200  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 194 - 280
Target Start/End: Complemental strand, 5298835 - 5298749
Alignment:
194 aattgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttg 280  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
5298835 aattgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtctttg 5298749  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 2736247 - 2736182
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
2736247 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 2736182  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 39959915 - 39959850
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
39959915 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 39959850  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 1076262 - 1076197
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||||||||    
1076262 gtgggatttgaacccacgccctttcggaccagaaccttaatctgacgccttagaccaactcggcca 1076197  T

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Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 42617403 - 42617483
Alignment:
197 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42617403 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct 42617483  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 28545569 - 28545504
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
28545569 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 28545504  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 28549984 - 28549919
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
28549984 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 28549919  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 28556152 - 28556087
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
28556152 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 28556087  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 47958511 - 47958576
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
47958511 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 47958576  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 48253928 - 48253863
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
48253928 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 48253863  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 24142897 - 24142962
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||| |||| |||||||||| ||| |||||||||||||||||| |||||||||    
24142897 gtgggatttgaacccacaccctatcggaccagaaccttaatctggcgccttagaccaactcggcca 24142962  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 36977679 - 36977732
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttaga 258  Q
    |||||||||||||||| |||||||| | |||||||||||||||  |||||||||    
36977679 gtgggatttgaacccatgccctttcaggccagagcctaaatctaacgccttaga 36977732  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 2415947 - 2415883
Alignment:
206 tgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||| ||||||| |||||||||||||||  ||| || ||||||||||||||| |||||||||    
2415947 tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca 2415883  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 46961430 - 46961385
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggc 250  Q
    |||||||||||||||||||| |||| ||||||| ||| ||||||||    
46961430 gtgggatttgaacccacgccttttcagaccagaaccttaatctggc 46961385  T

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Target: scaffold0648 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 7745 - 7826
Alignment:
197 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 278  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
7745 tgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtctt 7826  T

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Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 43930110 - 43930191
Alignment:
197 tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt 278  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
43930110 tgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtctt 43930191  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 33075869 - 33075804
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
33075869 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 33075804  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 55899070 - 55899134
Alignment:
206 tgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||| ||||||| |||||||||||||||  ||| || ||||||||||||||| |||||||||    
55899070 tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca 55899134  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 228935 - 228867
Alignment:
205 gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca 269  Q
    ||||||||||||||||||||||  ||||  ||||||| | | | |||||||||||||||||||||||||    
228935 gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca 228867  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 240480 - 240412
Alignment:
205 gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca 269  Q
    ||||||||||||||||||||||  ||||  ||||||| | | | |||||||||||||||||||||||||    
240480 gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca 240412  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 42678844 - 42678894
Alignment:
209 gatttgaacccacgccctttcggaccagagcctaaatctggcgccttagac 259  Q
    ||||||||  ||||||||||||||| ||| ||| |||||||||||||||||    
42678844 gatttgaattcacgccctttcggacgagaaccttaatctggcgccttagac 42678894  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 47819298 - 47819366
Alignment:
205 gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca 269  Q
    ||||||||||||||||||||||  ||||  ||||||| | | | |||||||||||||||||||||||||    
47819298 gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca 47819366  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 36011959 - 36011894
Alignment:
205 gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
36011959 gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca 36011894  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 30809870 - 30809934
Alignment:
206 tgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca 269  Q
    ||||||| ||||||| |||||||||||||||  ||| || ||||||||||||||| |||||||||    
30809870 tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca 30809934  T

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