View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9003_low_37 (Length: 343)
Name: NF9003_low_37
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_37 |
 |  |
|
| [»] scaffold0648 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 42084872 - 42085165
Alignment:
| Q |
18 |
tgaggaaccaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttggtagttaattcgttgtgtggt |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42084872 |
tgaggaacaaacaacaaaactgcagcaagatgagagtgccattgttattgttatgtaacataacacaaaatcagttttggtagttaattcgttgtgtggt |
42084971 |
T |
 |
| Q |
118 |
ggtaactaactgttatggatcagttttgtcgatt----aagaaaatagtttaatattatgaataagaaaatgnnnnnnntaattgacagctgtgggattt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42084972 |
ggtaactaactgttatggatcagttttgtcgattaagaaagaaaatagtttaatattatgaataagaaaatgaaaaaaataattgacagctgtgggattt |
42085071 |
T |
 |
| Q |
214 |
gaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgctgattat-ttgtctgatcttttatac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
42085072 |
gaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgctgattatgtcgtctgatattttatac |
42085165 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 21127742 - 21127807
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
21127742 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
21127807 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 43291871 - 43291936
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
43291871 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
43291936 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 34935809 - 34935729
Alignment:
| Q |
197 |
tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct |
277 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
34935809 |
tgacggctgtgagatttgaacccacgccctttcaaaccggagcctaaatctgatgccttagaccacttggccaaaccgtct |
34935729 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 12974332 - 12974244
Alignment:
| Q |
197 |
tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgctgat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12974332 |
tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttgttgat |
12974244 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 40579764 - 40579681
Alignment:
| Q |
195 |
attgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40579764 |
attgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
40579681 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 38274991 - 38275045
Alignment:
| Q |
224 |
cctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38274991 |
cctttcggaccagagcctaaatctggcgccgtagaccactcggccaaactgtctt |
38275045 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 17537537 - 17537469
Alignment:
| Q |
205 |
gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca |
269 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | | | ||||||||||||||||||||||||| |
|
|
| T |
17537537 |
gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca |
17537469 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 33802582 - 33802664
Alignment:
| Q |
196 |
ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802582 |
ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
33802664 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 47490277 - 47490359
Alignment:
| Q |
196 |
ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47490277 |
ttgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
47490359 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 25948281 - 25948200
Alignment:
| Q |
197 |
tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25948281 |
tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
25948200 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 194 - 280
Target Start/End: Complemental strand, 5298835 - 5298749
Alignment:
| Q |
194 |
aattgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctttg |
280 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5298835 |
aattgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtctttg |
5298749 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 2736247 - 2736182
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
2736247 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
2736182 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 39959915 - 39959850
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
39959915 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
39959850 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 1076262 - 1076197
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||| |
|
|
| T |
1076262 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctgacgccttagaccaactcggcca |
1076197 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 42617403 - 42617483
Alignment:
| Q |
197 |
tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42617403 |
tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtct |
42617483 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 28545569 - 28545504
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
28545569 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
28545504 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 28549984 - 28549919
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
28549984 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
28549919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 28556152 - 28556087
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
28556152 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
28556087 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 47958511 - 47958576
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
47958511 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
47958576 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 48253928 - 48253863
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
48253928 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
48253863 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 24142897 - 24142962
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
24142897 |
gtgggatttgaacccacaccctatcggaccagaaccttaatctggcgccttagaccaactcggcca |
24142962 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 36977679 - 36977732
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttaga |
258 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||||||| ||||||||| |
|
|
| T |
36977679 |
gtgggatttgaacccatgccctttcaggccagagcctaaatctaacgccttaga |
36977732 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 2415947 - 2415883
Alignment:
| Q |
206 |
tgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||| || ||||||||||||||| ||||||||| |
|
|
| T |
2415947 |
tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca |
2415883 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 46961430 - 46961385
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggc |
250 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| ||| |||||||| |
|
|
| T |
46961430 |
gtgggatttgaacccacgccttttcagaccagaaccttaatctggc |
46961385 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 7745 - 7826
Alignment:
| Q |
197 |
tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
278 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7745 |
tgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtctt |
7826 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 43930110 - 43930191
Alignment:
| Q |
197 |
tgacagctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaactgtctt |
278 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43930110 |
tgacggctgtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagaccactcggccaaaccgtctt |
43930191 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 33075869 - 33075804
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
33075869 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
33075804 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 55899070 - 55899134
Alignment:
| Q |
206 |
tgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||| || ||||||||||||||| ||||||||| |
|
|
| T |
55899070 |
tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca |
55899134 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 228935 - 228867
Alignment:
| Q |
205 |
gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca |
269 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | | | ||||||||||||||||||||||||| |
|
|
| T |
228935 |
gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca |
228867 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 240480 - 240412
Alignment:
| Q |
205 |
gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca |
269 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | | | ||||||||||||||||||||||||| |
|
|
| T |
240480 |
gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca |
240412 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 42678844 - 42678894
Alignment:
| Q |
209 |
gatttgaacccacgccctttcggaccagagcctaaatctggcgccttagac |
259 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
42678844 |
gatttgaattcacgccctttcggacgagaaccttaatctggcgccttagac |
42678894 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 47819298 - 47819366
Alignment:
| Q |
205 |
gtgggatttgaacccacgccct--ttcg--gaccagagcctaaatctggcgccttagaccactcggcca |
269 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | | | ||||||||||||||||||||||||| |
|
|
| T |
47819298 |
gtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggcca |
47819366 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 36011959 - 36011894
Alignment:
| Q |
205 |
gtgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
36011959 |
gtgggatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggcca |
36011894 |
T |
 |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 30809870 - 30809934
Alignment:
| Q |
206 |
tgggatttgaacccacgccctttcggaccagagcctaaatctggcgccttagacc-actcggcca |
269 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||| || ||||||||||||||| ||||||||| |
|
|
| T |
30809870 |
tgggattcgaacccatgccctttcggaccagtacctgaaactggcgccttagaccaactcggcca |
30809934 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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