View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9003_low_39 (Length: 331)

Name: NF9003_low_39
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9003_low_39
NF9003_low_39
[»] chr5 (5 HSPs)
chr5 (6-97)||(17190613-17190705)
chr5 (6-94)||(42958523-42958612)
chr5 (6-37)||(32153758-32153789)
chr5 (1-55)||(34457696-34457749)
chr5 (5-37)||(18237201-18237233)
[»] chr1 (6 HSPs)
chr1 (6-47)||(932064-932105)
chr1 (6-94)||(29068163-29068252)
chr1 (6-37)||(19078996-19079027)
chr1 (6-37)||(19126884-19126915)
chr1 (6-94)||(24886122-24886211)
chr1 (8-75)||(12876068-12876136)
[»] chr7 (8 HSPs)
chr7 (6-75)||(29310448-29310518)
chr7 (6-99)||(36738542-36738636)
chr7 (2-37)||(557442-557477)
chr7 (54-93)||(46994370-46994409)
chr7 (6-94)||(41873443-41873532)
chr7 (6-75)||(47822064-47822134)
chr7 (5-58)||(32377302-32377355)
chr7 (7-75)||(45508523-45508592)
[»] chr2 (2 HSPs)
chr2 (5-86)||(6951781-6951863)
chr2 (6-93)||(7709830-7709918)
[»] chr4 (4 HSPs)
chr4 (6-94)||(37306413-37306502)
chr4 (5-37)||(43480326-43480358)
chr4 (2-50)||(51823139-51823187)
chr4 (6-94)||(31699486-31699575)
[»] chr8 (3 HSPs)
chr8 (11-99)||(6580918-6581007)
chr8 (6-37)||(33440569-33440600)
chr8 (60-97)||(41692668-41692705)
[»] scaffold0922 (1 HSPs)
scaffold0922 (5-37)||(749-781)
[»] chr3 (2 HSPs)
chr3 (5-37)||(20909358-20909390)
chr3 (5-37)||(42780754-42780786)
[»] chr6 (2 HSPs)
chr6 (6-37)||(7447631-7447662)
chr6 (6-94)||(32439561-32439650)


Alignment Details
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 17190705 - 17190613
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgttcata 97  Q
    |||||||||||||||||||||||||||||||| ||||||| | |  |||  |||||||||||||||||||| | || ||||||| ||||||||    
T  17190705 aaatggatcccacataaagtggtgagacccacataagtttcacctaataggaaagtgagtgttagagagagtgctagaaagagagtgttcata 17190613  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 42958523 - 42958612
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgttc 94  Q
    |||||||||||||||||||||||||||||| | | ||||| |||| ||| ||||||||||||||||| ||| | || ||||||| |||||    
T  42958523 aaatggatcccacataaagtggtgagacccgcatgagtttcatccaatagaaaagtgagtgttagagtgagtgctagaaagagagtgttc 42958612  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 32153789 - 32153758
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccac 37  Q
    ||||||||||||||||||||||||||||||||    
T  32153789 aaatggatcccacataaagtggtgagacccac 32153758  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34457696 - 34457749
Alignment:
Q  1 tttaaaaatggatcccacataaagtggtgagacccacgtaagttttatccgataa 55  Q
    ||||||||||||||||||||||||| |||||| |||| | |||||||||| ||||    
T  34457696 tttaaaaatggatcccacataaagttgtgagatccacct-agttttatccaataa 34457749  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 18237233 - 18237201
Alignment:
Q  5 aaaatggatcccacataaagtggtgagacccac 37  Q
    ||||| |||||||||||||||||||||||||||    
T  18237233 aaaatagatcccacataaagtggtgagacccac 18237201  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 932064 - 932105
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagtttta 47  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  932064 aaatggatcccacataaagtggtgagacccacgtaagtttta 932105  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 29068163 - 29068252
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgttc 94  Q
    |||| ||||||||||||| ||||||||||||| | ||||| |||| |||  | |||||||||||||||||| | || ||||||| |||||    
T  29068163 aaattgatcccacataaaatggtgagacccacatgagtttcatccaataggagagtgagtgttagagagagtgctagaaagagagtgttc 29068252  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 19078996 - 19079027
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccac 37  Q
    ||||||||||||||||||||||||||||||||    
T  19078996 aaatggatcccacataaagtggtgagacccac 19079027  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 19126884 - 19126915
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccac 37  Q
    ||||||||||||||||||||||||||||||||    
T  19126884 aaatggatcccacataaagtggtgagacccac 19126915  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 24886122 - 24886211
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgttc 94  Q
    |||| |||||||||||||| |||||||||||| | ||||| | || |||  | |||||||||||||||||| | || ||||||| |||||    
T  24886122 aaatagatcccacataaagcggtgagacccacatgagtttcacccaataggagagtgagtgttagagagagtgctagaaagagagtgttc 24886211  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 12876068 - 12876136
Alignment:
Q  8 atggatcccacataaagtggtgagacccacgtaagttttatccgataaaa-agtgagtgttagagagag 75  Q
    ||||||||||||||||||||||||| |||| ||| ||| |||  |||||| || |||||||| ||||||    
T  12876068 atggatcccacataaagtggtgagatccacataaatttcatcaaataaaatagcgagtgttaaagagag 12876136  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 29310518 - 29310448
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgat-aaaaagtgagtgttagagagag 75  Q
    |||||||||||||||||||||||||||||||| | ||||| | || || ||||||||||||||||| ||||    
T  29310518 aaatggatcccacataaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgttagaaagag 29310448  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 36738542 - 36738636
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgttcataac 99  Q
    |||||||||||||||||||||||||||||||| | ||||| | || |||  | ||||||||||||| |||| | |||||||||| ||||| ||||    
T  36738542 aaatggatcccacataaagtggtgagacccacatgagtttcacccaataggagagtgagtgttagaaagagtgctaaaaagagagtgttcttaac 36738636  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 557477 - 557442
Alignment:
Q  2 ttaaaaatggatcccacataaagtggtgagacccac 37  Q
    ||||||||||||||||||||||||||||||||||||    
T  557477 ttaaaaatggatcccacataaagtggtgagacccac 557442  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 46994409 - 46994370
Alignment:
Q  54 aaaaagtgagtgttagagagagcgttaaaaagagattgtt 93  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  46994409 aaaaagtgagtgttagagagagcgttaaaaagagagtgtt 46994370  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 41873532 - 41873443
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgataaaaa-gtgagtgttagagagagcgttaaaaagagattgttc 94  Q
    ||||||| ||||||||||||| |||||| ||| | ||||| | || ||||||| ||||||||||||||||| | || ||||||| |||||    
T  41873532 aaatggaacccacataaagtgatgagactcacatgagtttcacccaataaaaaagtgagtgttagagagagtgctagaaagagagtgttc 41873443  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 47822064 - 47822134
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagag 75  Q
    ||||||||||||||||||||||||||| |||| |  |||| | || ||| || ||||||||||||||||||    
T  47822064 aaatggatcccacataaagtggtgagatccacatgggtttcacccaatagaagagtgagtgttagagagag 47822134  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 32377355 - 32377302
Alignment:
Q  5 aaaatggatcccacataaagtggtgagacccacgtaagttttatccgataaaaa 58  Q
    ||||| |||||||||||||||||| ||||| || ||| |||||||| |||||||    
T  32377355 aaaatcgatcccacataaagtggtaagacctacataaattttatccaataaaaa 32377302  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 45508592 - 45508523
Alignment:
Q  7 aatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagag 75  Q
    |||||||||||| ||||||||||||||||||||  |||| | || ||| || | ||||||||||||||||    
T  45508592 aatggatcccacgtaaagtggtgagacccacgtgggtttcacccaatagaagaatgagtgttagagagag 45508523  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 6951781 - 6951863
Alignment:
Q  5 aaaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaaga 86  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||| |||  || |||||||||| |||||| |||| |||||    
T  6951781 aaaatggatcccacataaagtggtgagacccacatgagtttcatccaataggaaggtgagtgttaaagagagtgttagaaaga 6951863  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 7709830 - 7709918
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgtt 93  Q
    |||| ||||||||||||||||||||| ||||| | ||||| | || |||  | |||||||||||||||||  | |||||||||| ||||    
T  7709830 aaatagatcccacataaagtggtgagtcccacatgagtttcaccctataggagagtgagtgttagagagattgctaaaaagagaatgtt 7709918  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 37306502 - 37306413
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgttc 94  Q
    ||||||||| |||||||||||||||||||||| | ||||| | || ||| || |||||||||||||||||| | || ||||||| |||||    
T  37306502 aaatggatctcacataaagtggtgagacccacatgagtttcacccaatataagagtgagtgttagagagagtgctagaaagagagtgttc 37306413  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 43480326 - 43480358
Alignment:
Q  5 aaaatggatcccacataaagtggtgagacccac 37  Q
    |||||||||||||||||||||||||||||||||    
T  43480326 aaaatggatcccacataaagtggtgagacccac 43480358  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 51823139 - 51823187
Alignment:
Q  2 ttaaaaatggatcccacataaagtggtgagacccacgtaagttttatcc 50  Q
    ||||||||||||| |||||||||||||||||||||| | ||||| ||||    
T  51823139 ttaaaaatggatcgcacataaagtggtgagacccacatgagtttcatcc 51823187  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 31699575 - 31699486
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgttc 94  Q
    ||||||| |||||||||| ||||||||||||| |  |||| |||| |||  | |||||||||||||||||| | || ||||||| |||||    
T  31699575 aaatggaccccacataaaatggtgagacccacatgtgtttaatccaataggagagtgagtgttagagagagtgctagaaagagagtgttc 31699486  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 6580918 - 6581007
Alignment:
Q  11 gatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgttcataac 99  Q
    ||||||||||||||||||||||||||| | ||||| | || ||| ||  ||||||||||||||||| | || ||||||| ||||| ||||    
T  6580918 gatcccacataaagtggtgagacccacatgagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttcttaac 6581007  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 33440600 - 33440569
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccac 37  Q
    ||||||||||||||||||||||||||||||||    
T  33440600 aaatggatcccacataaagtggtgagacccac 33440569  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 41692668 - 41692705
Alignment:
Q  60 tgagtgttagagagagcgttaaaaagagattgttcata 97  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  41692668 tgagtgttagagagagagttaaaaagagactgttcata 41692705  T

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Target: scaffold0922 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 749 - 781
Alignment:
Q  5 aaaatggatcccacataaagtggtgagacccac 37  Q
    |||||||||||||||||||||||||||||||||    
T  749 aaaatggatcccacataaagtggtgagacccac 781  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 20909390 - 20909358
Alignment:
Q  5 aaaatggatcccacataaagtggtgagacccac 37  Q
    |||||||||||||||||||||||||||||||||    
T  20909390 aaaatggatcccacataaagtggtgagacccac 20909358  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 42780754 - 42780786
Alignment:
Q  5 aaaatggatcccacataaagtggtgagacccac 37  Q
    |||||||||||||||||||||||||||||||||    
T  42780754 aaaatggatcccacataaagtggtgagacccac 42780786  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 7447662 - 7447631
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccac 37  Q
    ||||||||||||||||||||||||||||||||    
T  7447662 aaatggatcccacataaagtggtgagacccac 7447631  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 32439561 - 32439650
Alignment:
Q  6 aaatggatcccacataaagtggtgagacccacgtaagttttatccgata-aaaagtgagtgttagagagagcgttaaaaagagattgttc 94  Q
    ||||||||||||||||||| |||||| ||||| |  |||| |||| ||| |||| | |||||||||||||| | || ||||||| |||||    
T  32439561 aaatggatcccacataaagcggtgagccccacttgggtttcatccaatagaaaaataagtgttagagagagtgctagaaagagagtgttc 32439650  T

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