View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_41 (Length: 330)
Name: NF9003_low_41
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 2220357 - 2220600
Alignment:
| Q |
21 |
aaatattaacattatcaaaattaacaatggtgtagttcttgttttttacttagtgatgttttcaaagatttatacaataagctgtgaatatgaattatat |
120 |
Q |
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| T |
2220357 |
aaatattaacattatcaaaattaacaatggtgtagttcttgttttttacttagtgatgttttcaaagatttatacaataagctgtgaatatgaattatat |
2220456 |
T |
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| Q |
121 |
ctgtttgttttaatgtttataattgattagttagacactcctcactctttcttgttagttaattcttttgaaagaagttctaaatctcaccattcatata |
220 |
Q |
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| T |
2220457 |
ctgtttgttttaatgtttataattgattagttggacactccttactctttcttgttagttaattcttttgaaagcagttctaaatctcaccattcatata |
2220556 |
T |
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| Q |
221 |
taatggcagtgcagtgatgatttttctcacattactcatttgtg |
264 |
Q |
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| T |
2220557 |
taatggcagtgcagtgatgatttttctcacattactcatttgtg |
2220600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 2207374 - 2207522
Alignment:
| Q |
32 |
ttatcaaaattaacaatggtgtagttcttgttttttacttagtgatgttttcaaagatttatacaataagctgtgaatatgaattatatctgtttgtttt |
131 |
Q |
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| T |
2207374 |
ttatcaaaattaacagtggtgtagttcttgttttttacttagtgatgttttcaaagatttatacaataagcagtgaatgtgaattataactgtttgtttt |
2207473 |
T |
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| Q |
132 |
aatgtttataattgattagttagacactcctcactctttcttgttagtt |
180 |
Q |
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| T |
2207474 |
aatgtttataattgattggttggacactccttactctttcttgttagtt |
2207522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 2207623 - 2207682
Alignment:
| Q |
227 |
cagtgcagtgatgatttttctcacattactcatttgtgggttttactcttttgtgttaac |
286 |
Q |
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| T |
2207623 |
cagtgcagtgataatttttctcatgttactcatttgtgggattttctcttttgtggtaac |
2207682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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