View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_42 (Length: 326)
Name: NF9003_low_42
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 13996826 - 13996531
Alignment:
| Q |
18 |
atgaggtagctcaatagttgttgataatgtggataatgaatattgttttatgtggatcttttttgaattcatgtctcatttcaagtcatctcaagttgtg |
117 |
Q |
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| T |
13996826 |
atgaggtagctcaatagttgttgataatgtggataatgaatattgttttatgtggatcttctttgaattcatgtctcatttcaagtcatctcaagttgtg |
13996727 |
T |
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| Q |
118 |
tctgatatttgannnnnnnn-ctaagattttcaatcatattagtcctctttatggaaaactttgtgctatgtctgtcagctataaacttcgtgtttgagg |
216 |
Q |
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| T |
13996726 |
tctgatatttgatttttttttctaagtttttcaatcatattagtcctctttatggaaaactttgtgctatgtctgtcagctataaacttcgtgtttgagg |
13996627 |
T |
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| Q |
217 |
atggaatgcctcgcgaagtgttttagtggcggttcatagccgttttgggtaataaataatcgctcaaattgttgccttaagttggaatctgatgtc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13996626 |
atggaatgcctcgcgaagtgttttagtggcggttcatagccgttttgggtaataaataatcgctcaaattgttgccttaagttggaatctgctgtc |
13996531 |
T |
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