View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_48 (Length: 303)
Name: NF9003_low_48
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 32 - 288
Target Start/End: Original strand, 2220903 - 2221148
Alignment:
| Q |
32 |
ctatccactttatagctcgaagaagactccaattaagcctctccttccttccattccattccatgtgtttcatattctatattcgctactgagttgcagc |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2220903 |
ctatccactttatagctcgaagaagactccaattaagcctctccttccttcc-----attccatgtgtttcatattctatattcgctactcagttgcagc |
2220997 |
T |
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| Q |
132 |
taccaacacttgtcatacataggcatgaagaaatcaattcaaattcaaacacaaccaacgtcatcaaaatctgatccatcaaggtttcatttcacatagt |
231 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2220998 |
taccaacacttgtcattaataggcatgaagaaatc------aattcaaacacaaccaacgtcatcaaaatctgctccatcaaggtttcatttcacatagt |
2221091 |
T |
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| Q |
232 |
caccaataggattgagctgccctccactcggccaatagacactacccgatctgatgt |
288 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2221092 |
caccaataggattgagctgccctccactcggccaacagacactacccgatctgatgt |
2221148 |
T |
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