View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9003_low_55 (Length: 281)

Name: NF9003_low_55
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9003_low_55
NF9003_low_55
[»] chr8 (6 HSPs)
chr8 (24-225)||(23828343-23828543)
chr8 (153-226)||(42315341-42315414)
chr8 (153-226)||(45244283-45244356)
chr8 (114-228)||(26981032-26981145)
chr8 (156-226)||(7496757-7496827)
chr8 (155-225)||(26083903-26083972)
[»] chr6 (8 HSPs)
chr6 (90-223)||(15296147-15296280)
chr6 (153-226)||(31665627-31665700)
chr6 (155-226)||(31442516-31442586)
chr6 (155-225)||(20915998-20916067)
chr6 (155-225)||(21762022-21762091)
chr6 (155-222)||(30836482-30836548)
chr6 (155-225)||(826733-826802)
chr6 (179-227)||(26839987-26840035)
[»] chr5 (6 HSPs)
chr5 (92-225)||(37337323-37337456)
chr5 (93-226)||(11300702-11300835)
chr5 (155-226)||(26110687-26110758)
chr5 (138-225)||(23045484-23045571)
chr5 (158-225)||(31981793-31981859)
chr5 (140-224)||(22780046-22780128)
[»] chr3 (10 HSPs)
chr3 (155-225)||(1529165-1529235)
chr3 (155-226)||(39484809-39484880)
chr3 (155-200)||(37605421-37605466)
chr3 (98-226)||(15291460-15291586)
chr3 (155-226)||(52041385-52041455)
chr3 (155-227)||(1141742-1141813)
chr3 (192-226)||(15996416-15996450)
chr3 (155-225)||(22424371-22424440)
chr3 (192-225)||(48910166-48910199)
chr3 (158-226)||(42655772-42655839)
[»] chr4 (5 HSPs)
chr4 (140-226)||(6898738-6898823)
chr4 (155-225)||(12094856-12094925)
chr4 (155-222)||(9451245-9451311)
chr4 (155-225)||(24257703-24257772)
chr4 (160-225)||(9199512-9199576)
[»] chr2 (7 HSPs)
chr2 (155-225)||(38996521-38996590)
chr2 (155-226)||(28926074-28926144)
chr2 (155-226)||(32281485-32281555)
chr2 (156-222)||(21922337-21922402)
chr2 (157-226)||(29280084-29280152)
chr2 (155-226)||(22625388-22625458)
chr2 (155-225)||(38955841-38955910)
[»] chr1 (6 HSPs)
chr1 (155-228)||(46555499-46555572)
chr1 (155-225)||(15700721-15700790)
chr1 (19-226)||(44508600-44508791)
chr1 (155-225)||(22964007-22964076)
chr1 (158-214)||(3908833-3908888)
chr1 (175-225)||(24819183-24819233)
[»] chr7 (3 HSPs)
chr7 (157-225)||(39742297-39742364)
chr7 (155-225)||(20077343-20077412)
chr7 (226-262)||(12515017-12515053)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 23828543 - 23828343
Alignment:
Q  24 attgaatgtattaaatgacaaagaaagaaacatggatcggctgagctgaaaagttgtgggagggaaacttgatttttcaaggtgcaatcttgattaggat 123  Q
    |||||| |||||||||| |||   |||||  |||||||||| ||| |||||| | ||| ||||||||||| ||||| |||||||| ||  ||||||||||    
T  23828543 attgaacgtattaaatgccaattgaagaataatggatcggcagagttgaaaattggtgagagggaaactttatttt-caaggtgccatgctgattaggat 23828445  T
Q  124 aaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaag 223  Q
    ||||||  |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  23828444 aaacactaaggagtaattaaggctgaagcattggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaacaagctctagtaagaaag 23828345  T
Q  224 at 225  Q
    ||    
T  23828344 at 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 42315414 - 42315341
Alignment:
Q  153 attggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  42315414 attggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 42315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 45244283 - 45244356
Alignment:
Q  153 attggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| || |||| |||||||||||||||||    
T  45244283 attggagggaaaatattaggttaagaattagggttactaatagcttgaccagacaaactttagtaagaaagata 45244356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 26981145 - 26981032
Alignment:
Q  114 tgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagcttt 213  Q
    ||||||||| ||||||  ||||| | |||||||||  |   |||||| ||||||||||||||||| |||||||    ||| |||||||||||||||||||    
T  26981145 tgattaggaaaaacactaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaa-ttagggtatgatattgcttgatcaaacaagcttt 26981047  T
Q  214 agtaagaaagatact 228  Q
    |||||||||||||||    
T  26981046 agtaagaaagatact 26981032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 7496827 - 7496757
Alignment:
Q  156 ggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||| ||  | ||||| |||||||| |  ||||||||||||||||||||||||||||||||||||    
T  7496827 ggagggaaaaaataggtttaaatattagggtcagctatagcttgatcaaacaagctttagtaagaaagata 7496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 26083972 - 26083903
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||| |||||||||||    ||| |||||| || |||||||||||||||||||||    
T  26083972 tggagggaaaatattaggtt-aaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 26083903  T

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Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 15296280 - 15296147
Alignment:
Q  90 acttgatttttcaaggtgcaatcttgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttac 189  Q
    |||||||||||||||||| |||  ||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  15296280 acttgatttttcaaggtgaaatgctgattaggaaaaacaccaaggagtaattaaggcataaacattggagggaaaatattaggttaaaaattagggttac 15296181  T
Q  190 ttatagcttgatcaaacaagctttagtaagaaag 223  Q
    |||||||||||  |||||||||||||||||||||    
T  15296180 ttatagcttgacaaaacaagctttagtaagaaag 15296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 31665627 - 31665700
Alignment:
Q  153 attggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  31665627 attggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 31442586 - 31442516
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||||||||||||||||| |||||||   | || |||||| |||||||||||||||||||||||||    
T  31442586 tggagggaaaatattaggttaaaa-ttagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 20915998 - 20916067
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||||||| ||| |||  | ||| ||||||||| |||||||||||||||||||||    
T  20915998 tggagggaaaatattaggttaaaa-ttaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 21762091 - 21762022
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    ||||||||||||| |||||||||| ||||||| |   |||||||||||| ||||| |||||||||||||||    
T  21762091 tggagggaaaatagtaggttaaaa-ttagggtgagcaatagcttgatcagacaagttttagtaagaaagat 21762022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 30836482 - 30836548
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaa 222  Q
    ||||||||||||||||| |||||| ||||||| |   || ||||||||| ||||||||||||||||||    
T  30836482 tggagggaaaatattagattaaaa-ttagggtgaacaattgcttgatcagacaagctttagtaagaaa 30836548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 826733 - 826802
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||| ||||||| ||| |   ||||||||| || ||||| |||||||||||||||    
T  826733 tggagggaaaatattaggtt-aaaattaaggtgaacaatagcttgaccagacaagttttagtaagaaagat 826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 26840035 - 26839987
Alignment:
Q  179 attagggttacttatagcttgatcaaacaagctttagtaagaaagatac 227  Q
    |||||||||| | || |||||||||||||| |||||| |||||||||||    
T  26840035 attagggttaatgatggcttgatcaaacaaactttagaaagaaagatac 26839987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 37337456 - 37337323
Alignment:
Q  92 ttgatttttcaaggtgcaatcttgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttactt 191  Q
    ||||||| |||||||| |||  ||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  37337456 ttgatttctcaaggtgaaatgctgattaggaaaaacaccaaggagtaattaaggcataaacattggagggaaaatattaggttaaaaattagggttactt 37337357  T
Q  192 atagcttgatcaaacaagctttagtaagaaagat 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  37337356 atagcttgaccaaacaagctttagtaagaaagat 37337323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 11300702 - 11300835
Alignment:
Q  93 tgatttttcaaggtgcaatcttgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttactta 192  Q
    ||||||||||||||| |||  ||||||||| ||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  11300702 tgatttttcaaggtgaaatgctgattaggaaaaacatcaaggagtaattaaggcataaacattggagggaaaatattaggttaaaaattagggttactta 11300801  T
Q  193 tagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||| | || ||||| ||||||||||||||||    
T  11300802 tagcttcaccagacaagttttagtaagaaagata 11300835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 26110758 - 26110687
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagata 26110687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 23045571 - 23045484
Alignment:
Q  138 aattaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    ||||||||||| | ||||||||||||||||||||||||| ||| ||| | || ||||||||||||| |||| |||||| |||||||||    
T  23045571 aattaatgcttgagcattggagggaaaatattaggttaagaatcaggttaacatatagcttgatcagacaaactttagaaagaaagat 23045484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 31981859 - 31981793
Alignment:
Q  158 agggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    ||||||||||||||||||||| ||||| | |   || |||||||||||||||||||||||| ||||||    
T  31981859 agggaaaatattaggttaaaa-ttaggttgaacaattgcttgatcaaacaagctttagtaaaaaagat 31981793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 22780046 - 22780128
Alignment:
Q  140 ttaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaaga 224  Q
    |||||||| | ||| ||||||||||| |||||||||| | ||||||| |   |||||||||||| ||||||||||| ||||||||    
T  22780046 ttaatgctaacacaatggagggaaaa-attaggttaaga-ttagggtaaacaatagcttgatcagacaagctttagaaagaaaga 22780128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 1529235 - 1529165
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  1529235 tggagggaaaaaattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 39484809 - 39484880
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggtta-cttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||||||||||||||||| | ||||| | | |||||||||| |||||||||||||||||||||||||    
T  39484809 tggagggaaaatattaggttaaaact-agggtgaacatatagcttgaccaaacaagctttagtaagaaagata 39484880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 37605421 - 37605466
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttga 200  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  37605421 tggagggaaaatattaggttaagaattagggttactaatagcttga 37605466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 15291586 - 15291460
Alignment:
Q  98 tttcaaggtgcaatcttgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagct 197  Q
    |||||| ||| ||| ||||||||||| | |||  || || | |||||||| | ||| ||||||||||| |||||||||| | ||||||| |   ||||||    
T  15291586 tttcaaagtggaatgttgattaggattagcacttagaaggagttaatgctaatacaatggagggaaaa-attaggttaaga-ttagggtaaacaatagct 15291489  T
Q  198 tgatcaaacaagctttagtaagaaagata 226  Q
    ||| |||||||||||||||||||||||||    
T  15291488 tgaccaaacaagctttagtaagaaagata 15291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 52041385 - 52041455
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||| ||||||||||||||||||| ||||||| |   ||||||||| || ||||||||||||||||||||||    
T  52041385 tggaaggaaaatattaggttaaaa-ttagggtgaacaatagcttgaccagacaagctttagtaagaaagata 52041455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 1141813 - 1141742
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagatac 227  Q
    ||||||||||||||||| |||||| |||| || |   || |||||| ||||||||||||||||||||||||||    
T  1141813 tggagggaaaatattagattaaaa-ttagagtgaacaattgcttgaccaaacaagctttagtaagaaagatac 1141742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 15996416 - 15996450
Alignment:
Q  192 atagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||||| ||||||||||||||||||||||    
T  15996416 atagcttgatcagacaagctttagtaagaaagata 15996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 22424371 - 22424440
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||| ||||||||||| |   ||||||||| || | || ||||||||||||||||    
T  22424371 tggagggaaaatattaggtt-aaaattagggtgaacaatagcttgaccagataaactttagtaagaaagat 22424440  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 48910166 - 48910199
Alignment:
Q  192 atagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||| |||||||||||||    
T  48910166 atagcttgatcaaacaagctctagtaagaaagat 48910199  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 42655839 - 42655772
Alignment:
Q  158 agggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    ||||||||||||| ||||||| ||||||| |   ||||||||| || ||||||||| ||||||||||||    
T  42655839 agggaaaatattatgttaaaa-ttagggtgaacaatagcttgaccagacaagctttggtaagaaagata 42655772  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 6898738 - 6898823
Alignment:
Q  140 ttaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||| | ||| |||| ||||||||||||||||| | ||||||||||  |||||||||||||||||||||||||||||||||||    
T  6898738 ttaatgctaacacaatggacggaaaatattaggttaaga-ttagggttaccaatagcttgatcaaacaagctttagtaagaaagata 6898823  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||    
T  12094856 tggagggaaaatattaggttaaaa-ttagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 9451311 - 9451245
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaa 222  Q
    |||||||||||||||||||| ||||||||||| |   ||||||||| || ||||||||||||||||||    
T  9451311 tggagggaaaatattaggtt-aaaattagggtgaacaatagcttgaccagacaagctttagtaagaaa 9451245  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 24257772 - 24257703
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||| ||||||||||||||||| ||||||| |   || |||||| ||||||||||||||||||||||||    
T  24257772 tggaggaaaaatattaggttaaaa-ttagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 9199576 - 9199512
Alignment:
Q  160 ggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    ||||||||||||||||||| |||||||    ||| |||||| || |||||||||||||||||||||    
T  9199576 ggaaaatattaggttaaaa-ttagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 38996521 - 38996590
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||||    
T  38996521 tggagggaaaatattaggttaaaa-ttagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 28926144 - 28926074
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  28926144 tggagggaaaa-attaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagata 28926074  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 32281555 - 32281485
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  32281555 tggagggaaaatactaggttaaaa-ttagggttactaatagcttgaccaaacaaactttagtaagaaagata 32281485  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 21922402 - 21922337
Alignment:
Q  156 ggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaa 222  Q
    ||||||||||||||||||||| | ||||||| | |||||||||||||| ||||||||||| ||||||    
T  21922402 ggagggaaaatattaggttaaga-ttagggtaagttatagcttgatcagacaagctttagaaagaaa 21922337  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 29280152 - 29280084
Alignment:
Q  157 gagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||||||||||||||| ||||||| |   ||||||| |||| ||||| ||||||||||||||||    
T  29280152 gagggaaaatattaggttaaaa-ttagggtgaacaatagcttcatcagacaagttttagtaagaaagata 29280084  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 22625388 - 22625458
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 226  Q
    |||||||||||||||||||| |||||||||||  |  || |||||| || ||||| ||||||||||||||||    
T  22625388 tggagggaaaatattaggtt-aaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 38955841 - 38955910
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||| | |||||||||||   |||| ||||||| | ||||||||||||| |||||    
T  38955841 tggagggaaaatattaggtt-agaattagggttatcaatagtttgatcagataagctttagtaagtaagat 38955910  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 46555572 - 46555499
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagatact 228  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| |  |||||||||||||| |||||||||    
T  46555572 tggagggaaaatattaggttaagaattagggttactaatagcttgaccggacaagctttagtaataaagatact 46555499  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 15700790 - 15700721
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  15700790 tggagggaaaatactaggttaaaa-ttagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 44508791 - 44508600
Alignment:
Q  19 attgaattgaatgtattaaatgacaaagaaagaaacatggatcggctgagctgaaaagttgtgggagggaaacttgatttttcaaggtgcaatcttgatt 118  Q
    |||||| ||| |||| |||||| |||||| || |||||||||||||  ||  ||||| | ||||||||| ||| ||||||||||||||  |||  |        
T  44508791 attgaaatgattgtaataaatgccaaagagaggaacatggatcggcatagtggaaaattggtgggagggtaacgtgatttttcaaggttgaatgct---- 44508696  T
Q  119 aggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaa 218  Q
    ||||||| |||  ||||| |||||| |||||||||||||||||||||            ||||||||||| | |||||||||||| ||||||||||| ||    
T  44508695 aggataatcactaaggagcaattaaggcttaaacattggagggaaaa------------aattagggttagtaatagcttgatcagacaagctttagaaa 44508608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 22964076 - 22964007
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||| || ||||||||||||||| |||||    
T  22964076 tggagggaaaatattaggttagaa-ttagggttaccaatagcttgaccagacaagctttagtaagtaagat 22964007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 3908833 - 3908888
Alignment:
Q  158 agggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagcttta 214  Q
    |||||||||| |||||||||| ||||||||||  |||||||||||| ||||||||||    
T  3908833 agggaaaatagtaggttaaaa-ttagggttaccaatagcttgatcagacaagcttta 3908888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 24819233 - 24819183
Alignment:
Q  175 aaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||| |||||    
T  24819233 aaaaattagggttagtaatagcttgaccaaacaagctttggtaagtaagat 24819183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39742297 - 39742364
Alignment:
Q  157 gagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||| | |||||||||   ||||||||||||||||||||||||||||||||||    
T  39742297 gagggaaaatattaggttaaga-ttagggttatcaatagcttgatcaaacaagctttagtaagaaagat 39742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 20077343 - 20077412
Alignment:
Q  155 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 225  Q
    |||||||||||||||||||||||| |||||||    ||| |||||| ||||||||||||||||||||||||    
T  20077343 tggagggaaaatattaggttaaaa-ttagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 12515053 - 12515017
Alignment:
Q  226 actaaactttcgacccgtgcttcgcacgggtcctatc 262  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  12515053 actagactttcgacccgtgcatcgcacgggtcctatc 12515017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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