View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_56 (Length: 279)
Name: NF9003_low_56
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 28288156 - 28287910
Alignment:
| Q |
20 |
agaaggttactagttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaa |
119 |
Q |
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| T |
28288156 |
agaaggttactggttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaa |
28288057 |
T |
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| Q |
120 |
aggcaattccatggccatatctagaattattttgagtgtcaataataaaggtgtaatgggttgtgaagtcagtgagttgacctatctttgagtcccatag |
219 |
Q |
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| T |
28288056 |
atgcaattccatggccatatctagaactattttgagtgtcgataataaaggtgtaatgggttgtgaagtcagtgagttgacctatttttgagtcccatag |
28287957 |
T |
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| Q |
220 |
taaaactttcttggaaaatatgactcttccaacttgactagtataat |
266 |
Q |
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| T |
28287956 |
taaaactttcttggaaaatatgactcttccaacttgactagtataat |
28287910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 28265610 - 28265815
Alignment:
| Q |
51 |
tgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaaggcaattccatggccatatctagaattatt |
150 |
Q |
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| T |
28265610 |
tgttaaataggcccataaaagcagtagctgaatttggtggaatatcaaatccaaaaggagccaaaaaaaatgcaagtccatgaccatgcctagaattatt |
28265709 |
T |
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| Q |
151 |
ttgagtgtcaataataaaggtgtaatgggttgtgaagtcagtgagttgacctatctttgagtcccatagtaaaactttcttggaaaatatgactcttcca |
250 |
Q |
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| T |
28265710 |
ttgagtgtcaatgataaaagtgtaatgggttttgaaatcagtgacttgacctgtttttgaatcccaaagtaacacctttctggaatacatggcccttcca |
28265809 |
T |
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| Q |
251 |
acttga |
256 |
Q |
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|||||| |
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| T |
28265810 |
acttga |
28265815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 28295399 - 28295638
Alignment:
| Q |
24 |
ggttactagttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaaggc |
123 |
Q |
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||||||||| |||| |||||| ||||||||||||||||| | |||| ||||| ||||||| | ||||||||||||||| ||||||||||||||||||| |
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| T |
28295399 |
ggttactagatgaaaccattgttgtggtgttaaatagacccataaagccaccatcagaattgagggggatttcaaatccataaggaaccaagaaaaaggc |
28295498 |
T |
|
| Q |
124 |
aattccatggccatatctagaa------ttattttgagtgtcaataataaaggtgtaatgggttgtgaagtcagtgagttgacctatctttgagtcccat |
217 |
Q |
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| T |
28295499 |
aagaccatggccatataatgaaggtgatctaccttgagtgttgatgacaaaagtgtaatgagttgtgaagtcagtgagttttcctgtgtttgaatcccaa |
28295598 |
T |
|
| Q |
218 |
agtaaaactttcttggaaaatatgactcttccaacttgac |
257 |
Q |
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| T |
28295599 |
agtaacactttttctgaatagaagactcttccaacttgac |
28295638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 28278276 - 28278114
Alignment:
| Q |
40 |
cattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaaggcaattccatggccatat |
139 |
Q |
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|||||| |||||||||||||| || | ||| ||||||||||||| ||||| ||||||| ||| | ||||| | |||||| ||||||||||| |||||| |
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| T |
28278276 |
cattgttgtggtgttaaataggcccatcaagccaccagcagaattgggtggaatttcaattcccaccggaacaaggaaaaacgcaattccatgaccatat |
28278177 |
T |
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| Q |
140 |
ctagaattattttgagtgtcaataataaaggtgtaatgggttgtgaagtcagtgagttgacct |
202 |
Q |
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||| | ||||||||||||||| ||||| |||||||| ||| | ||||||| |||||||||| |
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| T |
28278176 |
gtagtacgattttgagtgtcaatgataaaagtgtaatgagttttaaagtcagcgagttgacct |
28278114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 28305747 - 28305818
Alignment:
| Q |
164 |
ataaaggtgtaatgggttgtgaagtcagtgagttgacctatctttgagtcccatagtaaaactttcttggaa |
235 |
Q |
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||||| ||||| || |||||||||||||||||||||||| | ||||||||||| ||||| || || |||||| |
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| T |
28305747 |
ataaaagtgtagtgagttgtgaagtcagtgagttgacctgtttttgagtcccaaagtaacacctttttggaa |
28305818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 28305601 - 28305715
Alignment:
| Q |
24 |
ggttactagttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaaggc |
123 |
Q |
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||||||||| |||| |||||| |||||||| ||||| || | ||| |||||| || || |||||||||||||||||| ||| | | ||||||||||| |
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| T |
28305601 |
ggttactagatgaaagcattgttgtggtgttgaatagtcccatcaagccaccagaggagtttggtgggatttcaaatccataagcagctaagaaaaaggc |
28305700 |
T |
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| Q |
124 |
aattccatggccata |
138 |
Q |
| |
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| T |
28305701 |
aaggccatggccata |
28305715 |
T |
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