View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_58 (Length: 275)
Name: NF9003_low_58
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 33223139 - 33223382
Alignment:
| Q |
16 |
actaaaaaccaaaagttattttatttgatgtcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctcct |
115 |
Q |
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| T |
33223139 |
actaaaaaccaaaagttattttatttgatgtcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctcct |
33223238 |
T |
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| Q |
116 |
tcctgtctccttaacttcctttccatccattccattaaaaaacctcccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223239 |
tcctgtctccttaacttcctttccatccattccattaaaaaacctcccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacat |
33223338 |
T |
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| Q |
216 |
taccattattattgccattaatcacaccttgattgttaacaata |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223339 |
taccattattattgccattaatcacaccttgattgttaacaata |
33223382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 33226128 - 33226323
Alignment:
| Q |
35 |
tttatttgatgtcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatccatcccctccttcctgtctccttaac-ttc |
133 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| || |
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| T |
33226128 |
tttatttgatatcattttaaatactacaattgagaaaaatataattttagactttccctttgttaaaatcaatcccctccttcctgt-ttcttaactttt |
33226226 |
T |
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| Q |
134 |
ctttccatcc----attccattaaaaaacct-cccctctccttcgttgagccaaaccgaaagatatttaaggacttggtaaacacattaccattatt |
225 |
Q |
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||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| | |||||| |
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| T |
33226227 |
ttttccatccattaattccattaaaatacctccccctctccttcgttgacccaaaccgaaagatatttaaatacttggcaaacacattgcaattatt |
33226323 |
T |
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