View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_64 (Length: 271)
Name: NF9003_low_64
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_64 |
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| [»] scaffold1458 (1 HSPs) |
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| [»] scaffold0515 (1 HSPs) |
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| [»] scaffold0306 (1 HSPs) |
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| [»] scaffold0317 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 24838364 - 24838124
Alignment:
| Q |
14 |
cctgtgacaaatccagatcagctgaagatataccgatccacgacctaaccatcaaccaaaatggggcgaaaacagggcaagaatgaaacaagtgatgtgc |
113 |
Q |
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| T |
24838364 |
cctgtaacaaatccagatcagctgaagatataccaatccacgacctaaccatgcaccaaaaaggggcgaaaacagggcaagaatgaaacaagtgatgtgc |
24838265 |
T |
|
| Q |
114 |
tatttccaatccaccgcagccagtcacacaaaattgagagtcgtgagaaatgatgctgcacatcaccaaattgtccttaattggtaacctattacgaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24838264 |
tatttccaatccaccgcagccagtcacacaaaattgagagtcatgagaaatgatgctgcacatcaccaaattgtccttaattggtaacctattacgaata |
24838165 |
T |
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| Q |
214 |
aggctccaagccaaaagagagaccttaaagggaacctgttt |
254 |
Q |
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| T |
24838164 |
aggctccaagccaaaatagagaccttaaagggaacctgttt |
24838124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 18187010 - 18187231
Alignment:
| Q |
33 |
agctgaagatataccgatccacgacctaaccatcaaccaaaatggggcgaaaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgcag |
132 |
Q |
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||||||||||||||| ||||| |||||||| || ||| || ||||||||||| ||| ||||| | ||||||||||| | | |||||||||||||||| |
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| T |
18187010 |
agctgaagatataccaatccaagacctaactatgctccacaaaggggcgaaaacggggaaagaaaggaacaagtgatgcgttgtttccaatccaccgcaa |
18187109 |
T |
|
| Q |
133 |
ccagtcacacaaaattgagagtcgtgagaaatgatgctgcacatcaccaaattgtccttaattggtaacctattacgaataaggctccaagccaaaagag |
232 |
Q |
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||||||||||||||||||||||| |||||||||||| | | | |||||||||||||||| | ||||||||||||| |||||| ||||||||||||| | |
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| T |
18187110 |
ccagtcacacaaaattgagagtcatgagaaatgatgttacgcgacaccaaattgtccttagtcggtaacctattaccaataagcctccaagccaaaacaa |
18187209 |
T |
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| Q |
233 |
agaccttaaagggaacctgttt |
254 |
Q |
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||||||| |||||||||||||| |
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| T |
18187210 |
agaccttcaagggaacctgttt |
18187231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 9282537 - 9282707
Alignment:
| Q |
76 |
ggggcgaaaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgcagccagtcacacaaaattgagagtcgtgagaaatgatgctgcaca |
175 |
Q |
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||||||||||| ||| ||||| | ||||||||||| | | |||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||| |
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| T |
9282537 |
ggggcgaaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatgctaaaca |
9282636 |
T |
|
| Q |
176 |
tcaccaaattgtccttaattggtaacctattacgaataaggctccaagccaaaagagagaccttaaaggga |
246 |
Q |
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| T |
9282637 |
tcagcaaattgtctctagtcggtaacctattgcaaaagagcctccaagcctaaatagagaccttcaaggga |
9282707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 10442020 - 10442155
Alignment:
| Q |
32 |
cagctgaagatataccgatccacgacctaaccatcaaccaaaatggggcgaaaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgca |
131 |
Q |
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||||||||||||| || ||||| | |||||||| |||| | | ||||||||| |||||| || | ||||||||||| ||| |||||||||||||||| |
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| T |
10442020 |
cagctgaagatattccaatccaacatctaaccatacaccatagagaggcgaaaacggggcaaaaaaggaacaagtgatgagctgtttccaatccaccgca |
10442119 |
T |
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| Q |
132 |
gccagtcacacaaaattgagagtcgtgagaaatgatg |
168 |
Q |
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|| |||| ||||||||||| ||| |||||||||||| |
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| T |
10442120 |
tccggtca-acaaaattgagcgtcatgagaaatgatg |
10442155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 15143530 - 15143630
Alignment:
| Q |
135 |
agtcacacaaaattgagagtcgtgagaaatgatgctgcacatcaccaaattgtccttaattggtaacctattacgaataaggctccaagccaaaagagag |
234 |
Q |
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||||||||||||||| ||| ||||||||||||| | ||| ||||||||||||||||| | | |||||| ||||||||||| ||||||| ||||| |||| |
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| T |
15143530 |
agtcacacaaaattgtgaggcgtgagaaatgatcttacacgtcaccaaattgtccttagtcgataacctgttacgaataagcctccaagtcaaaatagag |
15143629 |
T |
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| Q |
235 |
a |
235 |
Q |
| |
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| T |
15143630 |
a |
15143630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 15143240 - 15143303
Alignment:
| Q |
76 |
ggggcgaaaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgcagccagtca |
139 |
Q |
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||||||||| | ||||||||| | ||||||||||||| | |||||| ||||||||||| ||||| |
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| T |
15143240 |
ggggcgaaagcggggcaagaaaggaacaagtgatgtgttgtttccactccaccgcagctagtca |
15143303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1458 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold1458
Description:
Target: scaffold1458; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 121 - 207
Alignment:
| Q |
82 |
aaaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgcagccagtcacacaaaattgagagtcgtgagaaatgatg |
168 |
Q |
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||||| ||||||||| | ||||||||||| ||| ||||||||||||| || | || |||||||||||||||||| |||||||||||| |
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| T |
121 |
aaaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccacatctagacacacaaaattgagagtcatgagaaatgatg |
207 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 2068 - 2154
Alignment:
| Q |
82 |
aaaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgcagccagtcacacaaaattgagagtcgtgagaaatgatg |
168 |
Q |
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||||| ||||||||| | ||||||||||| ||| ||||||||||||| || | || |||||||||||||||||| |||||||||||| |
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| T |
2068 |
aaaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccacatctagacacacaaaattgagagtcatgagaaatgatg |
2154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 2068 - 2154
Alignment:
| Q |
82 |
aaaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgcagccagtcacacaaaattgagagtcgtgagaaatgatg |
168 |
Q |
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||||| ||||||||| | ||||||||||| ||| ||||||||||||| || | || |||||||||||||||||| |||||||||||| |
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| T |
2068 |
aaaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccacatctagacacacaaaattgagagtcatgagaaatgatg |
2154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 17640 - 17556
Alignment:
| Q |
82 |
aaaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgcagccagtcacacaaaattgagagtcgtgagaaatgatg |
168 |
Q |
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||||| ||||||||| | ||||||||||| ||| |||||||||||||||| | || ||||||||||||||||| |||||||||||| |
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| T |
17640 |
aaaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccgcatctag--acacaaaattgagagtcatgagaaatgatg |
17556 |
T |
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