View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_65 (Length: 270)
Name: NF9003_low_65
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 24357651 - 24357884
Alignment:
| Q |
18 |
accatggtcttttttaaatatgaatgtgtgtttaattttgattactactaatgtctaaaaagaagaagnnnnnnnntagtctcattgaaatactacaaat |
117 |
Q |
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| T |
24357651 |
accatggtcttttttaaatatgaatgtgtgtttaattttgattactactaatgtctaaaaagaagaaggaaaaaaacagtctcattgaaatactacaaat |
24357750 |
T |
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| Q |
118 |
ctgatgataaatatgaagagtcgcacgattttattggtagatgtaataatgacattaggtatgtagcttaattctaagtttaccattaacaaataaagag |
217 |
Q |
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| T |
24357751 |
ctgatgttaaatatgaagagtcgcacgattttattggtagatgtaataatgacattaggtatgtagcttaattctaagtttaccattaacaaataaagag |
24357850 |
T |
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| Q |
218 |
gtttgctagcttaaatatgccatcggagggtaac |
251 |
Q |
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| T |
24357851 |
gtttgctagcttaaatatgccatcggagagtaac |
24357884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 24365637 - 24365528
Alignment:
| Q |
108 |
tactacaaatctgatgataaatatgaagagtcgcacgattttattggtagatgtaataatgacattaggtatgtagcttaattctaagtttaccattaac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||||| |
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| T |
24365637 |
tactacaaatctgatgataaatatgaagagtcgcacgattttcttggtagatgtaataatgacattaggcagttagcttaattataagtttaccattaat |
24365538 |
T |
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| Q |
208 |
aaataaagag |
217 |
Q |
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|||| ||||| |
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| T |
24365537 |
aaatgaagag |
24365528 |
T |
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