View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9003_low_69 (Length: 261)
Name: NF9003_low_69
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 3047200 - 3046998
Alignment:
| Q |
17 |
gatcatgccactatgtagcattagcaaataatatataagtagaccaaaaagctaagccaaactaagtagaacaagtatttgcatgtccataccagaaaaa |
116 |
Q |
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| T |
3047200 |
gatcatgccactatgtagcattagcaaataatatataagtagaccaaaaagctaagccaaactaagtagaacaagtatttgcatgtccataccagaaaaa |
3047101 |
T |
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| Q |
117 |
cagccagcaatgacctctattacaccatacaaacaaaacattaaatcaatttgtaaaatcagatgcaaataacagcagaccaaaaagctaatccaaacca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3047100 |
cagccagcaatgacctctattacaccatacaaacaaaacattaaatcaatttgtaaaatcagatgcaaataacagcacaccaaaaagctaatccaaacca |
3047001 |
T |
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| Q |
217 |
agt |
219 |
Q |
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||| |
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| T |
3047000 |
agt |
3046998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 3046996 - 3046963
Alignment:
| Q |
211 |
aaaccaagtttatgcttgtcaaaaccagaaaaac |
244 |
Q |
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| T |
3046996 |
aaaccaagtttatgcttgtcaaaaccagaaaaac |
3046963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 3047022 - 3046932
Alignment:
| Q |
59 |
accaaaaagctaagccaaactaagtagaac-aagtatttgcatgtccataccagaaaaacagccagcaatgacctctattacaccatacaa |
148 |
Q |
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||||||||||||| |||||| ||||| ||| |||| | ||| |||| | |||||||||||||||| ||| |||||||||| || |||||| |
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| T |
3047022 |
accaaaaagctaatccaaaccaagtaaaaccaagtttatgcttgtcaaaaccagaaaaacagccacaaataacctctattatacaatacaa |
3046932 |
T |
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