View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9003_low_77 (Length: 240)
Name: NF9003_low_77
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9003_low_77 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 18968885 - 18969101
Alignment:
| Q |
23 |
atgagaacaaatttagttctcaagatagcttgggttcaaatacatgtgaaatatcatgagtggcttggaaatcgtcaccaggatgcctagttatttattg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968885 |
atgagaacaaatttagttctcaagatagcttgggttcaaatacatgtgaaatatcatgagtggcttggaaatcgtcaccaggatgcctagttatttattg |
18968984 |
T |
|
| Q |
123 |
gtgattctctatttcataagttgtttgtattgcaaatactgtctttgtttgtggattattttagacttggaaatccgtaatttagtaatattggaacttg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
18968985 |
gtgattctctatttcataagttgtttgtatctcaaatattgtctttg-ttgtggattattttagacttggaaatccgtaatttagtaatgttggaatttg |
18969083 |
T |
|
| Q |
223 |
tgttgggagactgcgcca |
240 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18969084 |
tgttgggagactgcgcca |
18969101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 18947770 - 18947556
Alignment:
| Q |
22 |
gatgagaacaaatttagttctcaagatagcttgggttcaaatacatgtgaaatatcatgagtggcttggaaatcgtcaccaggatgcctagttatttatt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
18947770 |
gatgagaacaaatttagttctcaagatagcttgggttcaaatacatgtgaaatatcatgagtggcttggaaatcgtcaccaggatgccaagttat---tt |
18947674 |
T |
|
| Q |
122 |
ggtgattctctatttcataagttgtttgtattgcaaatactgtctttgtttgtggattattttagacttggaaatccgtaatttagtaatattggaactt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18947673 |
ggtgattctctatttcataagttgtttgtatctcaaatactgtctttgtttgtggattattttagacttgg-aatccgtaatttagtaatatcggaactt |
18947575 |
T |
|
| Q |
222 |
gtgttgggagactgcgcca |
240 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18947574 |
gtgttgggagactgcgcca |
18947556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 18993984 - 18994020
Alignment:
| Q |
54 |
gggttcaaatacatgtgaaatatcatgagtggcttgg |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18993984 |
gggttcaaatacatgtgaaatatcatgagtggcttgg |
18994020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 19006660 - 19006706
Alignment:
| Q |
105 |
atgcctagttatttattggtgattctctatttcataagttgtttgta |
151 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
19006660 |
atgccaagttatttatttgtgattctctatttcatatgttgtttgta |
19006706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 19006752 - 19006784
Alignment:
| Q |
186 |
gacttggaaatccgtaatttagtaatattggaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
19006752 |
gacttggaaatccgtaatttagtaatgttggaa |
19006784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University