View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9003_low_89 (Length: 209)

Name: NF9003_low_89
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9003_low_89
NF9003_low_89
[»] chr1 (16 HSPs)
chr1 (3-199)||(30368245-30368441)
chr1 (3-182)||(13070313-13070492)
chr1 (3-182)||(13204335-13204514)
chr1 (13-182)||(13100877-13101045)
chr1 (3-182)||(13094275-13094454)
chr1 (3-182)||(13129704-13129883)
chr1 (3-182)||(13161397-13161576)
chr1 (28-179)||(13244683-13244834)
chr1 (13-182)||(13007076-13007245)
chr1 (3-187)||(13271457-13271641)
chr1 (3-171)||(19279305-19279473)
chr1 (3-179)||(13085986-13086162)
chr1 (4-171)||(12964013-12964180)
chr1 (3-179)||(13065350-13065526)
chr1 (3-171)||(13081002-13081170)
chr1 (92-170)||(13010661-13010739)
[»] chr6 (1 HSPs)
chr6 (48-120)||(31380253-31380325)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 30368245 - 30368441
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||  |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30368245 gagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 30368344  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccctagggcttctgatgtcc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30368345 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccctagggcttctgttgtcc 30368441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 13070313 - 13070492
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||  |||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||| || ||||||||| |||||||||||||||||    
T  13070313 gagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagt 13070412  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc 182  Q
    ||| |||||||||||||||| |||||||| ||||||  |||||||||||||||||| |||||||||||||||||||||||    
T  13070413 ttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaacccc 13070492  T

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Target: chr1; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 13204514 - 13204335
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||  |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  13204514 gagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagt 13204415  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc 182  Q
    ||| |||||||||||||||| |||||||| ||||||  ||| ||||||||| || | |||||||||||||||||||||||    
T  13204414 ttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaacccc 13204335  T

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Target: chr1; HSP #4
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 13101045 - 13100877
Alignment:
Q  13 tcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaa 112  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||| ||||||    
T  13101045 tcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaa 13100947  T
Q  113 tgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc 182  Q
    |||||||||| |||||||| ||||||  |||||||||||||||||| ||||||||||||||| |||||||    
T  13100946 tgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataacccc 13100877  T

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Target: chr1; HSP #5
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 13094454 - 13094275
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||| ||| ||||| ||| | |||||| |||||||||||| |||||||||||||||||| |||||||| |||| |||||| ||||||||| |||||    
T  13094454 gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagt 13094355  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc 182  Q
    ||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  13094354 ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaacccc 13094275  T

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Target: chr1; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 13129883 - 13129704
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||| ||| ||||| ||| | |||||| |||||||||||| ||||||| |||||||||| |||||||| |||| |||||| |||||||||||||||    
T  13129883 gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagt 13129784  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc 182  Q
    ||| |||||||||||||||| |||||||| ||||||  |||||||||||||||||| |||||||||||||||||||||||    
T  13129783 ttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaacccc 13129704  T

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Target: chr1; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 13161576 - 13161397
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||| ||| ||||| ||| | |||||| ||||||| |||| |||||||||| ||||||| |||||||| |||| |||||| |||||||||||||||    
T  13161576 gagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagt 13161477  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc 182  Q
    ||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  13161476 ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaacccc 13161397  T

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Target: chr1; HSP #8
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 13244683 - 13244834
Alignment:
Q  28 attataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcag 127  Q
    |||||||||||||| |||| ||||||||||||||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||||||    
T  13244683 attataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag 13244782  T
Q  128 ctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaac 179  Q
    || | |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  13244783 cttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 13244834  T

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Target: chr1; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 13007245 - 13007076
Alignment:
Q  13 tcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaa 112  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||| |||| ||| ||||||    
T  13007245 tcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaa 13007146  T
Q  113 tgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc 182  Q
    |||||||||| ||||| || ||||||   |||||||||||| |||| |||| |||||||||| |||||||    
T  13007145 tgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataacccc 13007076  T

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Target: chr1; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 13271641 - 13271457
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||| |||||| | |||||| |||||| |||||||||||| |||||||||||| |||||| |||| |||||||| ||| | || |||||| ||||     
T  13271641 gagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagc 13271542  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccctaggg 187  Q
    ||  |||||||||| |||||||||||| |  | |||||||||||||||||||| || |||||||||||  |||| || |||||||    
T  13271541 tttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtcagtctgttactcctaggg 13271457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 19279305 - 19279473
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||| ||| || |||||||| |||||| |||||||||| | |||||||||||| || ||| |||| || ||||| ||| | || |||||| ||| |    
T  19279305 gagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact 19279404  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcac 171  Q
    ||| |||||||||| ||||||||||||||  | ||||||||||||| ||||||||||||||||||||||    
T  19279405 ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac 19279473  T

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Target: chr1; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 13086162 - 13085986
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||| |||||| | |||||| ||| |  |||||||||||| |||||||||||| || ||| |||| ||| |||||||| | || |||||| ||||     
T  13086162 gagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagc 13086063  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaac 179  Q
     | ||||||||||| ||||||||||||||  |||||||||||||||||||||| || |||||||||||  |||||||    
T  13086062 attgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaac 13085986  T

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Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 12964013 - 12964180
Alignment:
Q  4 agatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtt 103  Q
    ||||||| |||| | |||||| | |||||| | || |||||||  ||||||||||| |||||| |||| |||||||||||||| || |||||| |||| |    
T  12964013 agatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagct 12964112  T
Q  104 tcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcac 171  Q
    | ||||||||||| |||||||| |||    |||| ||||||||||||||| | || ||||||||||||    
T  12964113 ttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcac 12964180  T

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Target: chr1; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 13065350 - 13065526
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||| |||| | || ||||| |||||| ||||||| |||| ||||||||||||||||||| |||| || ||||||||| ||||||||||| | |      
T  13065350 gagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcacc 13065449  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaac 179  Q
    |||||| |||||||||||| ||| || ||  |  |||||||||||  ||||||  | ||||| ||||| ||||||||    
T  13065450 ttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatggtcatcctgtaac 13065526  T

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Target: chr1; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 13081002 - 13081170
Alignment:
Q  3 gagatggacatcagagagaggacacattataaatgtaccatcttccaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt 102  Q
    |||||||| |||||| |||||||| |||||| | || || ||||  ||||||||||| || ||| |||| || ||||| ||| | || |||||| |||||    
T  13081002 gagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagt 13081101  T
Q  103 ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcac 171  Q
    ||  |||||||||| ||||||||||||||  | ||||  ||||||||||| ||||| ||||||||||||    
T  13081102 tttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcac 13081170  T

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Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 13010739 - 13010661
Alignment:
Q  92 aagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtca 170  Q
    |||||||||||||| ||| |||||||||||| |||||||  ||||||||||| |||| |||||| || |||||||||||    
T  13010739 aagatcttagtttcattctaatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 31380253 - 31380325
Alignment:
Q  48 caagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatg 120  Q
    |||||||||| ||||||||||||||||  |||||||||| |||||||||||||||||| ||||||| ||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatg 31380325  T

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