View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9003_low_9 (Length: 662)

Name: NF9003_low_9
Description: NF9003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9003_low_9
NF9003_low_9
[»] chr2 (1 HSPs)
chr2 (16-646)||(40047953-40048583)
[»] chr4 (1 HSPs)
chr4 (130-258)||(22056082-22056210)


Alignment Details
Target: chr2 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 16 - 646
Target Start/End: Complemental strand, 40048583 - 40047953
Alignment:
Q  16 acagcaacagcaccagcagcgtcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacct 115  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40048583 acagcaccagcacaagcagcatcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacct 40048484  T
Q  116 cagattccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40048483 cagattccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacct 40048384  T
Q  216 aaactcacaactcatatcaccaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatctcaaagcggggttcttcaactcacta 315  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  40048383 aaactcacaactcatatcagcaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatctcaaagcagggttcttcaactcgcta 40048284  T
Q  316 aacgaaaacnnnnnnntcgaactattacaattccacattcttccacagtttgttgatagcaataactttgattctcttagtaaccctgttgagacagtgg 415  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40048283 aacgaaaacaaaaaaatcgaactattacaattccacattcttccacagtttgttgatagcaataactttgattctcttagtaaccctgttgagacagtgg 40048184  T
Q  416 ctggtaaagaccctttaaagcttccattgaacatcgaatcgtttggtaccagtgttagtctttcaactggtgtggttaatgctagtgttactggtgtagt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40048183 ctggtaaagaccctttaaagcttccattgaacatcgaatcgtttggtaccagtgttagtctttcaactggtgtggttaatgctagtgttactggtgtagt 40048084  T
Q  516 ctatcaagataacaagcttgctatatatcgtttggataaggttttgcttcctcttgatttctttgggactaaggcacctgctgctgctcctgttgcggaa 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40048083 ctatcaagataacaagcttgctatatatcgtttggataaggttttgcttcctcttgatttctttgggactaaggcacctgctgctgctcctgttgcggaa 40047984  T
Q  616 gcaatagcaccgaaagctgacaagacaaagt 646  Q
    |||||||||||||||||||| ||||||||||    
T  40047983 gcaatagcaccgaaagctgataagacaaagt 40047953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 130 - 258
Target Start/End: Original strand, 22056082 - 22056210
Alignment:
Q  130 gacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcacaactca 229  Q
    |||||||| |||| |||||| |||||||||||||||||| |  |||||| ||||||||||| ||||||| ||||| ||  || | ||||||| || ||||    
T  22056082 gacgacatcacaacaatccttaaaaaggcgaaaacattctccgtcctaatccgtctcctaaaaacaacagaaatcatgagcagcgtaaactcgcagctca 22056181  T
Q  230 tatcaccaaaaagcggcggattaacaatc 258  Q
    |  || |||||| |||||| |||||||||    
T  22056182 tcacagcaaaaaacggcggcttaacaatc 22056210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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