View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9004_low_11 (Length: 282)

Name: NF9004_low_11
Description: NF9004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9004_low_11
NF9004_low_11
[»] chr6 (7 HSPs)
chr6 (1-263)||(5391799-5392061)
chr6 (6-213)||(9759790-9759997)
chr6 (58-211)||(17227658-17227811)
chr6 (9-163)||(28605177-28605331)
chr6 (156-242)||(18295833-18295919)
chr6 (63-184)||(7218694-7218815)
chr6 (117-176)||(14223567-14223626)
[»] chr4 (19 HSPs)
chr4 (1-263)||(34994404-34994666)
chr4 (1-263)||(36950879-36951141)
chr4 (1-263)||(17469406-17469668)
chr4 (1-263)||(50694036-50694298)
chr4 (4-242)||(29192600-29192838)
chr4 (9-184)||(8110675-8110850)
chr4 (15-236)||(24059348-24059569)
chr4 (87-211)||(12915521-12915645)
chr4 (22-236)||(25134983-25135198)
chr4 (126-184)||(22340336-22340394)
chr4 (126-184)||(29123845-29123903)
chr4 (126-223)||(17838941-17839038)
chr4 (128-223)||(4303611-4303706)
chr4 (128-223)||(15705969-15706064)
chr4 (58-211)||(12290522-12290675)
chr4 (86-184)||(3621326-3621424)
chr4 (135-208)||(15649483-15649556)
chr4 (9-199)||(6614324-6614514)
chr4 (156-237)||(51872389-51872470)
[»] chr3 (16 HSPs)
chr3 (1-263)||(52195965-52196227)
chr3 (1-263)||(16663653-16663916)
chr3 (7-242)||(39633120-39633355)
chr3 (6-242)||(10753762-10753998)
chr3 (9-223)||(48547272-48547486)
chr3 (9-214)||(30737215-30737420)
chr3 (9-208)||(42462453-42462652)
chr3 (126-184)||(23603020-23603078)
chr3 (130-223)||(8594975-8595068)
chr3 (84-233)||(31635808-31635957)
chr3 (125-222)||(8542224-8542321)
chr3 (84-208)||(53152450-53152574)
chr3 (58-184)||(42459631-42459756)
chr3 (84-212)||(49764111-49764239)
chr3 (84-183)||(32945649-32945748)
chr3 (141-261)||(25996738-25996858)
[»] chr7 (18 HSPs)
chr7 (1-263)||(45649443-45649705)
chr7 (1-263)||(22866030-22866292)
chr7 (1-263)||(47552967-47553229)
chr7 (5-226)||(27868625-27868836)
chr7 (125-223)||(40892170-40892268)
chr7 (9-224)||(18815683-18815898)
chr7 (9-208)||(20705782-20705981)
chr7 (9-208)||(20873826-20874025)
chr7 (125-223)||(21607956-21608054)
chr7 (84-208)||(37075955-37076079)
chr7 (9-220)||(5196354-5196565)
chr7 (84-208)||(9403490-9403614)
chr7 (141-236)||(14769686-14769780)
chr7 (141-236)||(15220137-15220231)
chr7 (9-184)||(27278359-27278534)
chr7 (156-242)||(12121285-12121371)
chr7 (135-184)||(586541-586590)
chr7 (135-208)||(34981580-34981653)
[»] chr8 (7 HSPs)
chr8 (1-263)||(10801962-10802225)
chr8 (147-263)||(29255924-29256040)
chr8 (9-184)||(26390531-26390706)
chr8 (9-184)||(29529931-29530105)
chr8 (9-223)||(31423505-31423719)
chr8 (135-208)||(2960006-2960079)
chr8 (140-236)||(26078147-26078243)
[»] chr5 (10 HSPs)
chr5 (1-263)||(29322471-29322733)
chr5 (1-263)||(38931447-38931709)
chr5 (1-263)||(8895062-8895324)
chr5 (5-242)||(31962958-31963195)
chr5 (9-242)||(27891397-27891630)
chr5 (9-184)||(11265782-11265957)
chr5 (87-184)||(29150062-29150159)
chr5 (84-206)||(6678941-6679063)
chr5 (10-206)||(10462428-10462624)
chr5 (84-206)||(5825334-5825456)
[»] chr2 (5 HSPs)
chr2 (1-236)||(33937059-33937292)
chr2 (1-242)||(1258159-1258401)
chr2 (1-242)||(22298611-22298852)
chr2 (129-184)||(38938229-38938284)
chr2 (84-208)||(21963141-21963265)
[»] chr1 (7 HSPs)
chr1 (4-242)||(37666052-37666290)
chr1 (163-242)||(32152394-32152473)
chr1 (9-184)||(45757440-45757615)
chr1 (9-223)||(5556985-5557199)
chr1 (128-199)||(49369509-49369580)
chr1 (9-196)||(26995710-26995896)
chr1 (141-224)||(40392431-40392513)
[»] scaffold0041 (1 HSPs)
scaffold0041 (125-223)||(74016-74114)
[»] scaffold0032 (1 HSPs)
scaffold0032 (9-223)||(58686-58900)
[»] scaffold0003 (1 HSPs)
scaffold0003 (63-184)||(225068-225189)
[»] scaffold0289 (1 HSPs)
scaffold0289 (5-37)||(10969-11001)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 5391799 - 5392061
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5391799 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttattcgtcatttggaaagatagaaa 5391898  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5391899 caggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattttgttc 5391998  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  5391999 gattttgactacccattttggaggaacaatcctttactttgtattcaggctatgatgtaatgt 5392061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 9759790 - 9759997
Alignment:
Q  6 caattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaa 105  Q
    ||||||||| ||||||||||||||||||| || ||||||||  | ||||| | ||| ||||||||    ||||| || |||||||||||| | ||||| |    
T  9759790 caattttgtcctcttggaggtttctcaaagaactctaggacgggctttactgctatatggatttcgacattatttgttatttggaaagatcgtaacagga 9759889  T
Q  106 gaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattt 205  Q
    |||| ||||| |||||   |||||||||||| ||||||||||  | | |||||||||||| || ||||||| |||||||||||||||| |||||||| ||    
T  9759890 gaatatttcaaaatcaaattgatcatcttgatgctcttcttgggagggttaaacttcaaatgtattggtggttgaaagcgaattacatcatgttcgactt 9759989  T
Q  206 tgactacc 213  Q
    ||||||||    
T  9759990 tgactacc 9759997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 17227811 - 17227658
Alignment:
Q  58 ttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaa 157  Q
    |||| |||||||| || ||||| || |||||||||||| | |||| |||||||||||| ||||||  |||| | |||| |||||||||| ||| | ||||    
T  17227811 ttatttggatttcggtgttatttgttatttggaaagatcgcaacaaaagaatttttcaaaatcacattgattagcttgcagctcttcttaaaagggttaa 17227712  T
Q  158 acttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgacta 211  Q
    ||| ||||||| ||||||| |||||||||| | |||||  ||| ||||||||||    
T  17227711 actccaaacgtattggtggttgaaagcgaacttcattactttcaattttgacta 17227658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 28605177 - 28605331
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    ||||||||||||||||| ||||| || ||||||| ||||   |||||  |||| |||||||| || ||||| || |||||||||||| | ||||| || |    
T  28605177 ttttgtgctcttggagggttctccaagaagtctatgacagcttttactattatttggatttcggtcttatttgttatttggaaagatcgtaacaggagga 28605276  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttca 163  Q
    |||||||||| ||   ||| ||||||||||||||| |||||| | ||||||||||    
T  28605277 tttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttca 28605331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 18295833 - 18295919
Alignment:
Q  156 aaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggaggaacaatcctttactttgt 242  Q
    ||||||||||||||||||||| ||||||| || |||||  |||||| |||||| ||| | | |||||| || |||||||||| ||||    
T  18295833 aaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggagaaataatcctttaccttgt 18295919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 7218694 - 7218815
Alignment:
Q  63 tggatttctgttttattcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttc 162  Q
    |||||||| |||||||  || || ||||||||| | || || ||||| ||||| || ||   || |||||||||||||||| | |||||| |||||||||    
T  7218694 tggatttcggttttatatgttatatggaaagatcgcaataggagaatatttcaaaaacaggttgttcatcttgaagctcttttggaaaaggttaaacttc 7218793  T
Q  163 aaacgttttggtggctgaaagc 184  Q
    || ||| ||||||| |||||||    
T  7218794 aagcgtattggtggttgaaagc 7218815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 14223567 - 14223626
Alignment:
Q  117 aatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtgg 176  Q
    ||||||| ||||||||| ||||||||| | |||| | ||||||||||||||| |||||||    
T  14223567 aatcactttgatcatctggaagctcttatggaaacggttaaacttcaaacgtattggtgg 14223626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 34994666 - 34994404
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34994666 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttattcgtcatttggaaagatagaaa 34994567  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34994566 caggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattttgttc 34994467  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  34994466 gattttgactacccattttggaggaacaatcctttactttgtattcaggctatgatgtaatgt 34994404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 36951141 - 36950879
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  36951141 ctactcaattttgtgctcttggaggtttctcaaaaaaatctaggacaggatttacagttatctggatgtctgttttattcgtcatttggaaagatcgaaa 36951042  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36951041 cagaagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacgttatgttc 36950942  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  36950941 gattttgactacctattttggaggaacaatcctttactttgtattcagactatgttgtaatgt 36950879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 17469406 - 17469668
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| || ||||| | |||||||||||||||||||||||||||    
T  17469406 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggttttatagttatttgaatttcagctttattcgtcatttggaaagatagaaa 17469505  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17469506 caggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacattttggtggctgaaagcgaattacattatgttc 17469605  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  17469606 gattttgactacccattttggaggaacaatcctttactttgtattcagactgtgatgtaatgt 17469668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 50694036 - 50694298
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  50694036 ctactcaattttgtgctcttggaggtttctcaaaaaagtgtaggacatgttttacagttatttggatttcggttttattcgtcatttggaaagatagaaa 50694135  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||| ||||||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  50694136 caggagaatttttcagaatcactttgatcatcttgaagttcttcttgaaagggttaaacttcaaacgttttggtggctgaaagcgaattgcattatgttc 50694235  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||    
T  50694236 gattttgactacccattttagaggaacaatcctttactttgtattcagactgtgatgtaatgt 50694298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 29192600 - 29192838
Alignment:
Q  4 ctcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacag 103  Q
    ||||||||||||||||||| ||||| |||||||| |||| |||| | |||||  |||| |||||||| |||||||||||||||| |||||||||||||||    
T  29192600 ctcaattttgtgctcttgggggtttttcaaaaaactctatgacaggttttactattatttggatttcggttttattcgtcatttagaaagatagaaacag 29192699  T
Q  104 aagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgat 203  Q
     |||||||||||| |||| | |||| ||||||||||||| ||||||| | ||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  29192700 gagaatttttcagcatcattttgattatcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaaagcgaattacatcatgttcgat 29192799  T
Q  204 tttgactacccattttggaggaacaatcctttactttgt 242  Q
    |||||||| || | ||||||||| |||||||||||||||    
T  29192800 tttgactatccctattggaggaaaaatcctttactttgt 29192838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 8110850 - 8110675
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    ||||||||||||||||| |||||||| || |||||||||   |||||  |||| |||||||| || ||||| || |||||||| ||  | ||||| || |    
T  8110850 ttttgtgctcttggagggttctcaaagaattctaggacagcttttactattatatggatttcggtcttatttgttatttggaaggaccgcaacaggagga 8110751  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    |||||||||| ||   ||| ||||| ||||||||| |||||| | |||||||||| || | |||||||||||||||    
T  8110750 tttttcagaaccaagttgaacatctcgaagctctttttgaaagggttaaacttcagacttattggtggctgaaagc 8110675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 24059569 - 24059348
Alignment:
Q  15 gctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaatttttc 114  Q
    |||||| |||| |||||||| || || ||||||| |||  |  |||| |||||||| || ||||| || || || |||||  | ||||  |||||||||     
T  24059569 gctcttagagggttctcaaagaattcaaggacatcattctctattatttggatttcggtcttatttgttatctgaaaagaccgtaacaatagaatttttt 24059470  T
Q  115 agaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactaccc 214  Q
    | ||||| | |||||| |||  ||  |||||||||||| ||||||| ||||| | ||||||| |||||||||| ||||||| |||||| |||||||||||    
T  24059469 ataatcattttgatcagcttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaactacattacgttcgactttgactaccc 24059370  T
Q  215 attttggaggaacaatccttta 236  Q
     ||||| ||| | |||||||||    
T  24059369 cttttgaaggcaaaatccttta 24059348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 12915645 - 12915521
Alignment:
Q  87 tggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcga 186  Q
    ||||||||| | ||||| |||||||| || ||||||| ||||||||| ||||||||| | |||| | ||||||||||||||| ||||||| ||||||| |    
T  12915645 tggaaagatcgcaacaggagaattttccaaaatcactttgatcatctagaagctcttatggaaagggttaaacttcaaacgtattggtggttgaaagcaa 12915546  T
Q  187 attacattatgttcgattttgacta 211  Q
    | | |||||  |||| |||||||||    
T  12915545 acttcattacattcgtttttgacta 12915521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 25135198 - 25134983
Alignment:
Q  22 gaggtttctcaaaaaagtctaggacatgattt-acagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaatttttcagaatc 120  Q
    |||||||||||||||| || ||||||   ||| ||  |||| |||||||| || ||||| || |||||||||||| | ||||| ||| ||||||| |||     
T  25135198 gaggtttctcaaaaaattcaaggacaacttttcactattatttggatttcagtcttatttgttatttggaaagatcgtaacagtagagtttttcataatg 25135099  T
Q  121 actctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttg 220  Q
    |||  ||||| |||| ||  ||||| |||||| ||||||  ||||| | ||||||| |||||||||| |||||||||||||| || || ||  | |||||    
T  25135098 acttggatcagcttgcagggcttctcgaaaaggttaaacaccaaacttattggtggttgaaagcgaactacattatgttcgacttcgagtattctttttg 25134999  T
Q  221 gaggaacaatccttta 236  Q
    |||| | |||||||||    
T  25134998 gaggcaaaatccttta 25134983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 22340394 - 22340336
Alignment:
Q  126 gatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  22340394 gatcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatgaaagc 22340336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 29123845 - 29123903
Alignment:
Q  126 gatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  29123845 gatcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatgaaagc 29123903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 17838941 - 17839038
Alignment:
Q  126 gatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggag 223  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||| || | ||| ||||||  |||||| || || ||||||||    
T  17838941 gatcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggatgaaagcaaacttcatcatgttcacttttgattatcccttttggag 17839038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 4303611 - 4303706
Alignment:
Q  128 tcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggag 223  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||||||| |||||||  | | ||||| |||| ||||||| || || ||||||||    
T  4303611 tcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggag 4303706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 15705969 - 15706064
Alignment:
Q  128 tcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggag 223  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||||||| |||||||  | | ||||| |||| ||||||| || || ||||||||    
T  15705969 tcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggag 15706064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 12290675 - 12290522
Alignment:
Q  58 ttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaa 157  Q
    |||| |||||||| || ||||| || |||||||||||| |||| ||||| ||||||||||| ||   ||| ||||| |||||||||   |||| | ||||    
T  12290675 ttatttggatttcggtcttatttgttatttggaaagatcgaaatagaaggatttttcagaaccaaagtgaacatctcgaagctctttcggaaagggttaa 12290576  T
Q  158 acttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgacta 211  Q
    |||||| || | ||||||| ||||||| || | ||| ||||||  |||||||||    
T  12290575 acttcagacttattggtggttgaaagcaaacttcatcatgttcacttttgacta 12290522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 3621424 - 3621326
Alignment:
Q  86 ttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    |||||||||| | ||||| || ||||||||||| ||   ||| ||||||||||||||| |||||| | |||||||||| || | ||||||| |||||||    
T  3621424 ttggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttcagacttattggtggttgaaagc 3621326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 15649483 - 15649556
Alignment:
Q  135 gaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||| ||||||||||| | | ||||||||||||||||||||| ||||||| || |||||  |||||| ||||||    
T  15649483 gaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacatattgttcgtttttga 15649556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 6614324 - 6614514
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||||||||||||||||||||| || |||  || |  |||| |  |||| |||||||| || |||||    || ||||||||| | ||||  || |    
T  6614324 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgagga 6614423  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgtt 199  Q
    ||||||| || ||   || |||| | |||| ||||||||||| | | ||||| ||||||||||||||| ||||||| || |||||| ||||    
T  6614424 tttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtt 6614514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 51872470 - 51872389
Alignment:
Q  156 aaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggaggaacaatcctttac 237  Q
    ||||||||||||||||||||| ||||||| || |||||  |||||| |||||| ||| | | |||||  || ||||||||||    
T  51872470 aaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggaaaaataatcctttac 51872389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 52196227 - 52195965
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52196227 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 52196128  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52196127 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcaaattacattatgttc 52196028  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||  |||||||||||||    
T  52196027 gattttgactatccattttggaggaacaatcttttactttgtattcaggctatgatgtaatgt 52195965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 16663916 - 16663653
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16663916 ctactcaattttgtgctcttggaggtttctcaaaaatgtctaggacaggttttacagttatctggatttcagttttattcgtcatttggaaagatagaaa 16663817  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16663816 cagaagaatttttcagaatcaatttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 16663717  T
Q  201 gattttgactacccattttggaggaacaatcctttac-tttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||    
T  16663716 gattttgactaccaattttggaggaacaatcatttacttttgtattcagactatgatgtaatgt 16663653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 39633120 - 39633355
Alignment:
Q  7 aattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaag 106  Q
    |||||||||||||||| ||||| || ||||| ||||||||| | |||||  |||| ||||||||  ||||||||||||||||||||||||||||||| ||    
T  39633120 aattttgtgctcttgggggtttttcgaaaaactctaggacaggttttactattatttggatttcaattttattcgtcatttggaaagatagaaacagcag 39633219  T
Q  107 aatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgatttt 206  Q
    |||||||||| |||||| |||||||||||||||||| ||||||| | ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||    
T  39633220 aatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaaagcgaattacatcatgttcgatttt 39633319  T
Q  207 gactacccattttggaggaacaatcctttactttgt 242  Q
    ||||| || | ||||||| | |||||||||||||||    
T  39633320 gactatccctattggaggcaaaatcctttactttgt 39633355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 10753998 - 10753762
Alignment:
Q  6 caattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaa 105  Q
    |||||||| |||||||||||||| || ||||| |||  |||| | |||||  |||| |||||||| |||||||| ||||| ||||| |||||||||||||    
T  10753998 caattttgcgctcttggaggtttttcgaaaaaatctgtgacaggttttactattatttggatttcggttttatttgtcatatggaaggatagaaacagaa 10753899  T
Q  106 gaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattt 205  Q
    ||||||||||| | || | |||||| ||||||| ||||||||||| | ||||||| || |||||||||||| ||||||||||||||||  ||||||||||    
T  10753898 gaatttttcagcaacaatttgatcagcttgaagttcttcttgaaagggttaaactccagacgttttggtggttgaaagcgaattacatcttgttcgattt 10753799  T
Q  206 tgactacccattttggaggaacaatcctttactttgt 242  Q
    |||||| || | ||||||||| ||||| || ||||||    
T  10753798 tgactatccttattggaggaaaaatccctttctttgt 10753762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 48547486 - 48547272
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||||||||||||||||||||| ||||||||||||   |||||  |||| |||||||| || ||||| || |||||||||||| | ||||| || |    
T  48547486 ttttgtgctcttggaggtttctcaaagaagtctaggacaacttttactattatatggatttcggtcttatttgttatttggaaagatcgcaacaggagga 48547387  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||||||||| ||   ||| ||||| ||||||||| |||||| | ||||||||||||| | ||||||| ||||||| || | ||| | ||||| ||||||    
T  48547386 tttttcagaaccaaattgaacatctcgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcatcacgttcgcttttga 48547287  T
Q  209 ctacccattttggag 223  Q
     || || ||||||||    
T  48547286 ttatcctttttggag 48547272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 30737420 - 30737215
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||| ||||||||||||||||||| || |||||||||   |||||  |||| |||||||| || ||||| || || || |||||| | || || ||||    
T  30737420 ttttgtactcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatttgttatatgaaaagatcgcaagaggagaa 30737321  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||| || ||||||  |||||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||| |||| | ||| | ||||||||| ||    
T  30737320 ttttccaaaatcacattgatcatcttgaagctcttcttgaaagggttaaacttcaaacgtattggtggttgaaatcgaacttcatcaggttcgatttaga 30737221  T
Q  209 ctaccc 214  Q
     |||||    
T  30737220 ttaccc 30737215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 42462652 - 42462453
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    ||||||||||||||||| || ||||| || | || || | | |||||  |||| |||||||| || ||||| || ||||| |||||| | ||||  || |    
T  42462652 ttttgtgctcttggaggcttttcaaagaattatatgaaaggttttactattatttggatttcggtcttatttgttatttgaaaagatcgcaacatgagga 42462553  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||| || || ||  |  |||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||| || | ||| ||||||| ||||||    
T  42462552 ttttccaaaaccatacgaatcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggttgaaagctaacttcatcatgttcgcttttga 42462453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 23603078 - 23603020
Alignment:
Q  126 gatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  23603078 gatcatcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaaagc 23603020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 8595068 - 8594975
Alignment:
Q  130 atcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggag 223  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||  | | ||||| |||| ||||||| || || ||||||||    
T  8595068 atcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggag 8594975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 31635808 - 31635957
Alignment:
Q  84 atttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaag 183  Q
    |||||||||||| | |||||||| ||||| || ||  | ||||||||||||||  |||||  ||||||||||||||||||||||| ||||||| |||||     
T  31635808 atttggaaagatcgcaacagaaggattttccacaacaagtctgatcatcttgagactcttgctgaaaagattaaacttcaaacgtattggtggttgaaat 31635907  T
Q  184 cgaattacattatgttcgattttgactacccattttggaggaacaatcct 233  Q
    || | |||||| ||||  ||||||| ||| |  |||||||| | ||||||    
T  31635908 cgtactacattttgtttaattttgattactctgtttggaggcataatcct 31635957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 8542321 - 8542224
Alignment:
Q  125 tgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttgga 222  Q
    ||||||||| |||||||||||||||| | ||||||||| ||||||||||||| ||||||| || ||||| | ||||| ||| || || || |||||||    
T  8542321 tgatcatctggaagctcttcttgaaagggttaaacttcgaacgttttggtggttgaaagctaactacatcacgttcgctttcgattatcccttttgga 8542224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 53152450 - 53152574
Alignment:
Q  84 atttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaag 183  Q
    |||||||||||| | ||||| || |||||||| || ||   || |||||| |||| ||||||||||| | ||||||| ||||||||||||||| ||||||    
T  53152450 atttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaag 53152549  T
Q  184 cgaattacattatgttcgattttga 208  Q
    | || |||||  |||||| ||||||    
T  53152550 ctaactacatattgttcgtttttga 53152574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 42459631 - 42459756
Alignment:
Q  58 ttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaa 157  Q
    |||| |||||||| || ||||  || || ||||||||| | ||||| |||||||| || ||||| | ||||||||||||||||||| | | || | ||||    
T  42459631 ttatttggatttcggtcttatatgttatatggaaagatcgcaacaggagaatttt-caaaatcattttgatcatcttgaagctcttatggtaagggttaa 42459729  T
Q  158 acttcaaacgttttggtggctgaaagc 184  Q
    ||||||||||| ||||||| |||||||    
T  42459730 acttcaaacgtattggtggttgaaagc 42459756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 49764239 - 49764111
Alignment:
Q  84 atttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaag 183  Q
    |||||||||||| | ||||  |||||||| || ||| | ||||||||  ||||  ||||| |||||||| ||||||| ||||||| ||||||| ||| |     
T  49764239 atttggaaagatcgcaacaacagaattttccacaataagtctgatcaaattgagactcttgttgaaaaggttaaactccaaacgtattggtggttgagat 49764140  T
Q  184 cgaattacattatgttcgattttgactac 212  Q
    || | |||||  |||| ||||||||||||    
T  49764139 cgtactacatcctgtttgattttgactac 49764111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 32945748 - 32945649
Alignment:
Q  84 atttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaag 183  Q
    |||||||||||| | ||||| || |||||||| || ||   || |||||| |||| ||||||||||| | | ||||| ||||||||||||||| ||||||    
T  32945748 atttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaag 32945649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 25996738 - 25996858
Alignment:
Q  141 cttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggaggaacaatcctttacttt 240  Q
    |||||||| ||| ||||||| ||||  | ||| ||| |||||||||| ||||| | |||| ||||||||||||| |||| |||| | |||| ||||  ||    
T  25996738 cttcttgagaaggttaaactccaaatatattgatggttgaaagcgaactacataacgttcaattttgactaccccttttagaggcaaaatcatttatgtt 25996837  T
Q  241 gtattcagaatatgatgtaat 261  Q
    || ||||   |||||||||||    
T  25996838 gttttcaagctatgatgtaat 25996858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 45649443 - 45649705
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  45649443 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatttggatttctgttttattcgtcatttgaaaagatagaaa 45649542  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    | | ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||    
T  45649543 ctggagaatttttcagaatcactctgatcatcttggagctcttcttgaaaggattaaacttcaaatgttttggtggctgaaagcgaattacattttgttc 45649642  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  45649643 gattttgattacccattttggaggaacaatcctttactttgtcttcaggctatgatgtaatgt 45649705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 22866030 - 22866292
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  22866030 ctactcaattttgtggtcttggaggtttctcaaaaaagtctaggacaagttttagagttatctggatttcagttttattcgtcatttggaaagatagaaa 22866129  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  22866130 catgagaatttttcagaatcattctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattatgttt 22866229  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||    
T  22866230 gattttgactacccattttggaggaacaatcttttactttgtattcagactatgctataatgt 22866292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 47553229 - 47552967
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47553229 ctactcaatttagtgctcttggaggtttctctaaaaagtctaggacaggttttacagttatctggatttcagttttattcgtcatttggaaagatagaaa 47553130  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||| ||||||||||||||||| | |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47553129 caggagaatttttcagaatcattttgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattttgttc 47553030  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||  |||| ||||||||    
T  47553029 gattttgactaccctttttgaaggaacaatcctttactttgtattcaggctatgctgtaatgt 47552967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 27868836 - 27868625
Alignment:
Q  5 tcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacaga 104  Q
    ||||||||||||| |||||||||||||||| || ||||||||| | |||||  |||| |||||||           ||||||||||||||  |||||||     
T  27868836 tcaattttgtgcttttggaggtttctcaaagaactctaggacaagttttactattatttggatttt----------gtcatttggaaagaccgaaacagg 27868747  T
Q  105 agaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgatt 204  Q
    | |||||||||| |||||  ||||||||| |||||||||||||||| ||||||| | ||||||| ||||||| |||||||||||||||| ||||||||||    
T  27868746 ataatttttcagcatcacattgatcatctagaagctcttcttgaaaggattaaaatccaaacgtattggtggttgaaagcgaattacatcatgttcgatt 27868647  T
Q  205 ttgactacccattttggaggaa 226  Q
    |||||||  | |||||||||||    
T  27868646 ttgactattccttttggaggaa 27868625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 40892170 - 40892268
Alignment:
Q  125 tgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggag 223  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||||||||| ||||||| || ||||| | ||||| ||||||||| || ||||||||    
T  40892170 tgatcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggag 40892268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 18815683 - 18815898
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    ||||||||||||||||| ||||||||||| ||  ||||||  ||  |  |||| |||||||| || ||||| || || | ||||||  | ||||| ||||    
T  18815683 ttttgtgctcttggagggttctcaaaaaattcatggacattcttatctattatttggatttcggtcttatttgttatctagaaagaccgtaacagtagaa 18815782  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    ||||| | ||||| | | |||| |||  |   |||||||||||| ||||||| ||||| | ||||||| |||||||||| ||||||| |||||| |||||    
T  18815783 tttttaataatcattttcatcagcttacaagacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaactacattacgttcgactttga 18815882  T
Q  209 ctacccattttggagg 224  Q
    ||| || |||||||||    
T  18815883 ctatcccttttggagg 18815898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 20705782 - 20705981
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||| |||||||| ||||| || ||||||| | ||   |||||  |||| |||||||| || |||||||| |||||||||||| |||| || || |    
T  20705782 ttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtcttattcgttatttggaaagatcgaaataggagga 20705881  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||||||||| ||   ||| ||||| |||||||||  ||||| | |||||||||  || | ||||||| ||||||| |||| ||| |||||  |||||||    
T  20705882 tttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaaagcaaatttcatcatgtttaattttga 20705981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 20873826 - 20874025
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||| |||||||| ||||| || ||||||| | ||   |||||  |||| |||||||| || |||||||| |||||||||||| |||| || || |    
T  20873826 ttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtcttattcgttatttggaaagatcgaaataggagga 20873925  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||||||||| ||   ||| ||||| |||||||||  ||||| | |||||||||  || | ||||||| ||||||| |||| ||| |||||  |||||||    
T  20873926 tttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaaagcaaatttcatcatgtttaattttga 20874025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 21608054 - 21607956
Alignment:
Q  125 tgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggag 223  Q
    ||||||| | ||||||||| |||||| | ||||||||||||||||||||||| ||||||| || ||||| | ||||| |||||| || || ||||||||    
T  21608054 tgatcatttggaagctctttttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgattatcccttttggag 21607956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 37075955 - 37076079
Alignment:
Q  84 atttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaag 183  Q
    |||||||||||| | ||||| || |||||||| || ||   || |||||| |||| ||||||||||| | ||||||| ||||||||||||||| ||||||    
T  37075955 atttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaag 37076054  T
Q  184 cgaattacattatgttcgattttga 208  Q
    | || |||||  |||||| ||||||    
T  37076055 ctaactacatattgttcgtttttga 37076079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 5196565 - 5196354
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    ||||||||||||||||| |  || ||||  |||||||||   |||||  |||| |||||| | |  ||||| || ||||| ||||||   ||||| ||||    
T  5196565 ttttgtgctcttggaggctattctaaaatctctaggacaacttttactattatttggattgcggccttatttgttatttgaaaagatcacaacaggagaa 5196466  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    ||||||| ||| |   |||||| |||| ||| ||| | |||||| |||||||  |||||| ||||||| |||||||| | ||||||| ||||||||| ||    
T  5196465 tttttcacaattagattgatcagcttgcagcgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcga 5196366  T
Q  209 ctacccattttg 220  Q
    |||||| |||||    
T  5196365 ctaccctttttg 5196354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 9403490 - 9403614
Alignment:
Q  84 atttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaag 183  Q
    |||||||||||| | ||||| || |||||||| || ||   || |||||| |||| ||||||||||| | | ||||| ||||||||||||||| ||||||    
T  9403490 atttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaag 9403589  T
Q  184 cgaattacattatgttcgattttga 208  Q
    | || |||||  |||||| ||||||    
T  9403590 ctaactacatattgttcgtttttga 9403614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 14769686 - 14769780
Alignment:
Q  141 cttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggaggaacaatccttta 236  Q
    |||||||| ||| ||||||| ||||| | ||||||| ||||| |||| ||||| | |||| ||||||||||||| ||||||||| | |||||||||    
T  14769686 cttcttgagaaggttaaactccaaacatattggtggttgaaaacgaactacataacgttcaattttgactaccc-ttttggaggcaaaatccttta 14769780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 15220137 - 15220231
Alignment:
Q  141 cttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggaggaacaatccttta 236  Q
    |||||||| ||| ||||||| ||||| | ||||||| ||||| |||| ||||| | |||| ||||||||||||| ||||||||| | |||||||||    
T  15220137 cttcttgagaaggttaaactccaaacatattggtggttgaaaacgaactacataacgttcaattttgactaccc-ttttggaggcaaaatccttta 15220231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 27278534 - 27278359
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    ||||||||||||| |||||||||||  || ||||| |||   |||||  |||| ||| |||  || ||||| || || | ||||||| | ||||| | ||    
T  27278534 ttttgtgctcttgcaggtttctcaaggaattctagaacagcttttactattatatgggttttggtcttatttgttatattgaaagatcgcaacagtataa 27278435  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    ||||  | ||||||  |||||||||||||||||||||| ||| | ||||| ||||| ||| ||||||| |||||||    
T  27278434 ttttctaaaatcacattgatcatcttgaagctcttcttaaaagggttaaatttcaatcgtattggtggttgaaagc 27278359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 12121371 - 12121285
Alignment:
Q  156 aaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggaggaacaatcctttactttgt 242  Q
    ||||||||||||||||||||| ||||||| || |||||  |||||| |||||| ||| | | |||||| || |||||||||| ||||    
T  12121371 aaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggagaaataatcctttaccttgt 12121285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 586590 - 586541
Alignment:
Q  135 gaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    |||| ||||||||||| | ||||||||||||||||||||||| |||||||    
T  586590 gaagttcttcttgaaagggttaaacttcaaacgttttggtggttgaaagc 586541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 34981653 - 34981580
Alignment:
Q  135 gaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||| ||||||||||| | | ||||||||||||||||||||| ||||||| || |||||  |||||| ||||||    
T  34981653 gaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacatattgttcgtttttga 34981580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10801962 - 10802225
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctc-aaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaa 99  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10801962 ctactcaatttagtgctcttggaggtttctctaaaaaagtctaggacaggttttacagttatctggatttcagttttattcgtcatttggaaagatagaa 10802061  T
Q  100 acagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgtt 199  Q
    |||| ||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10802062 acaggagaatttttcagaatcattctgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattatgtt 10802161  T
Q  200 cgattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  |||| ||||||||    
T  10802162 cgattttgactaccctttttggaggaacaatcctttactttgtattcaggctatgctgtaatgt 10802225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 29256040 - 29255924
Alignment:
Q  147 gaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggaggaacaatcctttactttgtattc 246  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29256040 gaaaggattaaacttcaaacgttttggtggctgaaaacgaattacattatgttcgattttgactacccattttggaggaacaatcctttactttgtattc 29255941  T
Q  247 agaatatgatgtaatgt 263  Q
    ||  |||| ||||||||    
T  29255940 aggctatgttgtaatgt 29255924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 26390531 - 26390706
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||| || || ||||||||||| || |||||||||   |||||  |||| |||| |||||| ||||| || || ||||||||| | ||||| ||||    
T  26390531 ttttgtgccctcggtggtttctcaaagaattctaggacaacttttactattatttggacttctgtcttatttgttatatggaaagatcgcaacaggagaa 26390630  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    |||| || ||||||  ||||||||| || ||||||||||||| |||||| |||||||||||||||||| |||||||    
T  26390631 ttttccaaaatcacagtgatcatctagaggctcttcttgaaaggattaagcttcaaacgttttggtggttgaaagc 26390706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 29530105 - 29529931
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||| |||| |||||||||||| || |||||||||   ||| |  ||||||||| |||||| ||||| || || ||||||||| | ||||||||||    
T  29530105 ttttgtgcccttgtaggtttctcaaagaattctaggacaac-tttcctattatctggacttctgtcttatttgttatatggaaagatcgtaacagaagaa 29530007  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    |||| || ||||||  ||||||||| || ||||||||||||| | |||| |||||||| ||||||||| |||||||    
T  29530006 ttttccaaaatcacagtgatcatctagatgctcttcttgaaagggttaagcttcaaacattttggtggttgaaagc 29529931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 31423505 - 31423719
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||||||||||||||||||||| || |||||||||   |||||  |||| |||||||| || ||||| || ||||| |||||| | ||||| || |    
T  31423505 ttttgtgctcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatttgttatttgaaaagatcgcaacaggagga 31423604  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||| || || ||   ||||||||| ||||||||| |||||| | ||||||||||||| | ||||||| ||||||| || | ||  | ||||| ||||||    
T  31423605 ttttccaaaaccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcagcacgttcgcttttga 31423704  T
Q  209 ctacccattttggag 223  Q
    ||| || ||||||||    
T  31423705 ctatcccttttggag 31423719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 2960006 - 2960079
Alignment:
Q  135 gaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||| ||||||||||| | | ||||||||||||||||||||| |||||||||| |||||  |||||| ||||||    
T  2960006 gaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagcgaactacatattgttcgtttttga 2960079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 26078147 - 26078243
Alignment:
Q  140 tcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggaggaacaatccttta 236  Q
    |||||||||||   | ||||||||||||||||||||| ||||||| || |||||  |||||| |||||| ||| | | |||||| || |||||||||    
T  26078147 tcttcttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggagaaataatccttta 26078243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 29322733 - 29322471
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||||  ||||||| |||||||||||||||||||||    
T  29322733 ctactcaattttgtgctcttggaggtttctctaaaaagtctaggacaggttttacaattatctggattttagttttatgcgtcatttggaaagatagaaa 29322634  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29322633 caagagaatttttcagaatcattctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattatattatgttc 29322534  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||    
T  29322533 gattttgactacccattttggaggaacaatcctttactttgtattcaggctatgctgtaatgt 29322471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 38931709 - 38931447
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||| ||||||||| |||||||||||||||||||    
T  38931709 ctacccaattttgtgctcttggaggtttctcaaaaaactctaggacaggttttacagttatttggatttcggttttattcatcatttggaaagatagaaa 38931610  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38931609 caggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagcgaattacattttgttc 38931510  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    |||||||| ||||| ||||||||||| ||||||||| |||||||||||| | || ||||||||    
T  38931509 gattttgattaccccttttggaggaataatcctttattttgtattcagactgtgttgtaatgt 38931447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 8895324 - 8895062
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  8895324 ctacccaattttgtgctcttggaggtttctcaaaaaattctaggacaggttttacagttatttggatttcagttttattcgtcatttggaaagatagaaa 8895225  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||| |||||||||||||||||||  ||||||||| ||||||||||||||| | |||||||||||||| ||| |||| ||||||||||||||||| ||||     
T  8895224 caggagaatttttcagaatcacttagatcatcttaaagctcttcttgaaagggttaaacttcaaacggtttagtggttgaaagcgaattacattttgttt 8895125  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgtattcagaatatgatgtaatgt 263  Q
    ||||||||||| || ||||||||||| |||| |||| |||||||||||| | || ||||||||    
T  8895124 gattttgactatcccttttggaggaataatcatttattttgtattcagactgtgttgtaatgt 8895062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 31962958 - 31963195
Alignment:
Q  5 tcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacaga 104  Q
    ||||||||||| |||||||||||||||||| || ||||||||| | |||||  |||| | |||||| ||  |||| ||||||||||||||  |||||||     
T  31962958 tcaattttgtggtcttggaggtttctcaaagaactctaggacaggttttactattatttcgatttcggtactatttgtcatttggaaagaccgaaacagg 31963057  T
Q  105 agaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgatt 204  Q
    |||||||||||| |||||  ||||||||| |||||||||||||||| | ||||| | ||||||| ||||||| |||||||||||||||| ||||| ||||    
T  31963058 agaatttttcagcatcacattgatcatctagaagctcttcttgaaagggttaaaatccaaacgtattggtggttgaaagcgaattacatcatgtttgatt 31963157  T
Q  205 ttgactacccattttggaggaacaatcctttactttgt 242  Q
    ||||||| || ||||||| ||| || |||||| |||||    
T  31963158 ttgactatcccttttggacgaaaaaccctttagtttgt 31963195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 27891630 - 27891397
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    ||||||||||||||||| |||||||| |||||||||||||  |||||  |||| |||||||  || ||||| || |||||||||||| | ||||| || |    
T  27891630 ttttgtgctcttggagggttctcaaagaagtctaggacatcttttactattatatggatttaggtcttatttgttatttggaaagatcgcaacaggagga 27891531  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||||||||| ||   ||| |||||  |||||||| |||||| | ||||||||||||| | ||||||| ||||||| || | ||| | ||||| ||||||    
T  27891530 tttttcagaaccaaattgaacatctcaaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcatcacgttcgcttttga 27891431  T
Q  209 ctacccattttggaggaacaatcctttactttgt 242  Q
    ||| || ||||| ||  | ||||| |||||||||    
T  27891430 ctatcccttttgaagacaaaatccattactttgt 27891397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 11265957 - 11265782
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||||||||||||||||||||  ||||||| || |   |||||  |||| |||||||| || ||||| || |||||||||||| | ||||| || |    
T  11265957 ttttgtgctcttggaggtttctcaaggaagtctatgaaagcttttactattatttggatttcggtcttatttgttatttggaaagatcgtaacaggagga 11265858  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    |||||||| |||| |  ||||||||||||||||| ||||||| | ||||||||||||| | ||||||| |||||||    
T  11265857 tttttcagcatcatttggatcatcttgaagctctccttgaaagggttaaacttcaaacttattggtggttgaaagc 11265782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 29150159 - 29150062
Alignment:
Q  87 tggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    ||||||||| |||| |||| |||||| || ||||||| ||||||||||||||||||| |||||| | ||||||||||||||| || |||| |||||||    
T  29150159 tggaaagatcgaaagagaaaaattttccaaaatcactttgatcatcttgaagctcttattgaaagggttaaacttcaaacgtattcgtggttgaaagc 29150062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 6678941 - 6679063
Alignment:
Q  84 atttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaag 183  Q
    |||||||||||| | ||||| || |||||||| || ||   || |||||| |||| ||||||||||| | ||||||| ||||||||||||||| ||||||    
T  6678941 atttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaag 6679040  T
Q  184 cgaattacattatgttcgatttt 206  Q
    | || |||||  |||||| ||||    
T  6679041 ctaactacatattgttcgttttt 6679063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 10462428 - 10462624
Alignment:
Q  10 tttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaat 109  Q
    ||||||||||||||||||||||||| || |||  || |  ||||||  |||| |||||||| || |||||    || ||||||||| | || || || ||    
T  10462428 tttgtgctcttggaggtttctcaaagaattctgtgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggat 10462527  T
Q  110 ttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgatttt 206  Q
    ||| || || ||   || |||| | |||| ||||||||||| | ||||||| ||||||||||||||| ||||||| || |||||  |||||| ||||    
T  10462528 tttccaaaaccaaattgttcatttggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttt 10462624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 5825334 - 5825456
Alignment:
Q  84 atttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaag 183  Q
    |||||||||||| | ||||| || |||||||| || ||   || |||||| ||||  |||||||||| | | ||||| ||||||||||||||| ||||||    
T  5825334 atttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaaag 5825433  T
Q  184 cgaattacattatgttcgatttt 206  Q
    | || |||||  |||||| ||||    
T  5825434 ctaactacatattgttcgttttt 5825456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 33937059 - 33937292
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    |||| ||||||||||||||||||||||| ||||||||  ||| |||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  33937059 ctacccaattttgtgctcttggaggtttttcaaaaaa--ctacgacaggatttactgttatttggatttcggttttattcgtcatttggaaagatagaaa 33937156  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||| ||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||| ||||||| ||||||| |||||||||||||||| ||||||    
T  33937157 caggagaatttttcagaatcactttgatcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttgaaagcgaattacatcatgttc 33937256  T
Q  201 gattttgactacccattttggaggaacaatccttta 236  Q
    ||||||||||| || | |||||| || |||||||||    
T  33937257 gattttgactatccctattggagaaaaaatccttta 33937292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 1258401 - 1258159
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| |||||||| ||||||||| |||||||||||||||||||    
T  1258401 ctacccaattttgtgctcttggaggtttttcaaaaaactctaggacaagatttactgttatttggatttcggttttattcttcatttggaaagatagaaa 1258302  T
Q  101 cagaagaa-tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgtt 199  Q
    ||| |||| ||||||| ||||||| ||||||||||||||||||  |||||| | ||||||| |||| || ||||||| |||||||||||||||| ||| |    
T  1258301 caggagaattttttcataatcactttgatcatcttgaagctctctttgaaagggttaaactccaaatgtattggtggttgaaagcgaattacatcatgct 1258202  T
Q  200 cgattttgactacccattttggaggaacaatcctttactttgt 242  Q
    |||||||||||| || | ||||||||| ||||||||| |||||    
T  1258201 cgattttgactatccctattggaggaaaaatcctttagtttgt 1258159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 22298852 - 22298611
Alignment:
Q  1 ctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaa 100  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||| | ||||| || || |||||||| ||| |||||||||| || |||||| ||||    
T  22298852 ctacccaattttgtgctcttggaggtttctcaaaaaactctaggacaggctttactgtcatttggatttcggttatattcgtcatatgaaaagattgaaa 22298753  T
Q  101 cagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttc 200  Q
    ||| ||||||||||| ||||||| |||||||||||||||||| ||||||| | ||||||| ||||||| ||||||| |||||||||||||||| |||||     
T  22298752 caggagaatttttcaaaatcactttgatcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttgaaagcgaattacatcatgttt 22298653  T
Q  201 gattttgactacccattttggaggaacaatcctttactttgt 242  Q
    ||||||||||| || | ||||||||| ||||||||| |||||    
T  22298652 gattttgactatccctattggaggaaaaatcctttagtttgt 22298611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 38938284 - 38938229
Alignment:
Q  129 catcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    |||||||||||||||||||||| | ||||||||||||| |||||| || |||||||    
T  38938284 catcttgaagctcttcttgaaagggttaaacttcaaactttttggcggttgaaagc 38938229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 21963265 - 21963141
Alignment:
Q  84 atttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaag 183  Q
    |||||||||||| | ||||| || |||||||| || ||   || |||||| ||||  |||||||||| | | ||||| ||||||||||||||| ||||||    
T  21963265 atttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaaag 21963166  T
Q  184 cgaattacattatgttcgattttga 208  Q
    | || |||||  |||||| ||||||    
T  21963165 ctaactacatattgttcgtttttga 21963141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 37666290 - 37666052
Alignment:
Q  4 ctcaattttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacag 103  Q
    |||||||||||||||| || ||||| |||||||| ||||||||| | |||||  |||| |||||||| ||||||||| ||||||||||||||||||||||    
T  37666290 ctcaattttgtgctctcgggggtttttcaaaaaactctaggacaagttttactattatttggatttcggttttattcatcatttggaaagatagaaacag 37666191  T
Q  104 aagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgat 203  Q
     |||||||||||| |||| | |||||||||||||||||| ||||||| | | ||||| ||||| ||||||||| ||||| ||||||||||||||||||||    
T  37666190 gagaatttttcagcatcaatttgatcatcttgaagctctacttgaaagggtcaaactccaaacattttggtggttgaaaacgaattacattatgttcgat 37666091  T
Q  204 tttgactacccattttggaggaacaatcctttactttgt 242  Q
    |||||||| || | ||||||||| |||||||||||||||    
T  37666090 tttgactatccctattggaggaaaaatcctttactttgt 37666052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 32152394 - 32152473
Alignment:
Q  163 aaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggaggaacaatcctttactttgt 242  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||| || | ||||||||| |||||||||||||||    
T  32152394 aaacgttttggtggttgaaagcgaattacatcatgttcgattttgactatccttattggaggaaaaatcctttactttgt 32152473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 45757615 - 45757440
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    ||||||||  ||||||| |||||||| || |||||||||   |||||  ||||||||| || ||| ||||| || || ||||||||| | ||||| | ||    
T  45757615 ttttgtgcctttggaggcttctcaaagaattctaggacaccttttactattatctggacttttgtcttatttgttatatggaaagattgcaacaggaaaa 45757516  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagc 184  Q
    |||| || ||||||  |||||||||  | ||||||||||||| | |||| |||||||| ||||||||| |||||||    
T  45757515 ttttccaaaatcacagtgatcatctaaatgctcttcttgaaagggttaagcttcaaacattttggtggttgaaagc 45757440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 5557199 - 5556985
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||||||||||| ||||||||| || ||| ||| |   |||||  |||| |||||||| || ||||| ||  ||||||||||| | ||||| || |    
T  5557199 ttttgtgctcttggagctttctcaaagaattcttggataacttttactattatatggatttcggtcttatttgttgtttggaaagatcgcaacaggagga 5557100  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||||||  | ||   ||||||||| ||||||||| |||||| | ||||||||||||| |  |||||| ||||||| || | ||| | ||||| ||||||    
T  5557099 tttttcaataccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaacttactggtggttgaaagcaaacttcatcacgttcgcttttga 5557000  T
Q  209 ctacccattttggag 223  Q
    ||| || ||||||||    
T  5556999 ctatcccttttggag 5556985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 49369580 - 49369509
Alignment:
Q  128 tcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgtt 199  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||| || | |||||||||    
T  49369580 tcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagcaaacttcattatgtt 49369509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 26995896 - 26995710
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||| |||||||||| ||||||||||| || ||||||  |||  | ||||| |||||||| || ||||| || || | ||||||  | ||||  ||||    
T  26995896 ttttgtactcttggagggttctcaaaaaattcaaggacaacattctctgttatttggatttcggtcttatt-gttatctagaaagaccgtaacaatagaa 26995798  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattat 196  Q
    ||||| | ||||| | |||| |||||  ||  |||||||| ||| ||||||| ||||| | ||||||| |||||||||| ||||||||    
T  26995797 tttttgacaatcattttgataatcttagaggacttcttgagaaggttaaactccaaacatattggtggttgaaagcgaactacattat 26995710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 40392513 - 40392431
Alignment:
Q  141 cttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggagg 224  Q
    |||||||||||| ||||||| ||||| | ||||||| |||||||||| ||||| | |||||| ||| |||| || |||||||||    
T  40392513 cttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaactacatgacgttcgacttt-actatcccttttggagg 40392431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 74114 - 74016
Alignment:
Q  125 tgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttgactacccattttggag 223  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||||||||| ||||||| || ||||| | ||||| ||||||||| || ||||||||    
T  74114 tgatcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggag 74016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 58686 - 58900
Alignment:
Q  9 ttttgtgctcttggaggtttctcaaaaaagtctaggacatgatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 108  Q
    |||||||||||||||||||||||||| ||  ||| || |   |||||  |||| |||||||| || ||||| || || ||||||||| | ||||| || |    
T  58686 ttttgtgctcttggaggtttctcaaagaacgctatgatagcttttactattatttggatttcggtcttatttgttatatggaaagatcgcaacaggagga 58785  T
Q  109 tttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 208  Q
    |||| || || ||    ||||||||||||||||||||||||| | ||||||||||||| | ||||||| ||||||| || | ||| |  |||| ||||||    
T  58786 ttttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaacttcaaacatattggtggttgaaagcaaacttcatcactttcgcttttga 58885  T
Q  209 ctacccattttggag 223  Q
    ||| || ||||||||    
T  58886 ctatcccttttggag 58900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 225068 - 225189
Alignment:
Q  63 tggatttctgttttattcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaagattaaacttc 162  Q
    |||||||| |||||||| || || ||||||||| | || || ||||| ||||| || ||   || |||||||||||||||| | |||||| |||||||||    
T  225068 tggatttcggttttatttgttatatggaaagatcgcaataggagaatatttcaaaagcaggttgttcatcttgaagctcttttggaaaaggttaaacttc 225167  T
Q  163 aaacgttttggtggctgaaagc 184  Q
    |||||| ||||||  |||||||    
T  225168 aaacgtattggtgattgaaagc 225189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 11001 - 10969
Alignment:
Q  5 tcaattttgtgctcttggaggtttctcaaaaaa 37  Q
    |||||||||||||||||||||||| ||||||||    
T  11001 tcaattttgtgctcttggaggtttatcaaaaaa 10969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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