View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9004_low_6 (Length: 513)
Name: NF9004_low_6
Description: NF9004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9004_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Complemental strand, 31926672 - 31926213
Alignment:
| Q |
19 |
cacctcttgggtgattttgatcctattcgagcatt---gctcgtaaggcttaactctcccaatgggtttaatcatattggtatcagtaatcacttaaact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31926672 |
cacctcttgggtgattttgatcctattcgagcattattgctcgtaaagcttaactctcccaatgggtttaatcat--tggtatcagtaatcacttaaact |
31926575 |
T |
|
| Q |
116 |
ttggaattcattatcttgatagctcatggaaaatcgattttcttgatggtttatttgatattgcagagcatgaaatctatccctagctgaggaagtcatc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31926574 |
ttggaattcattatcttgatagctcatggaaaatcgaatttcttgatggtttatttgatattgcagagcatgaaatctatccctagctgaggaagtcatc |
31926475 |
T |
|
| Q |
216 |
aatgtgagaattaaaggtgaggtcaagacaatatattatagaggatgatagttttggcctagatatatacggtatgatgacattggtataatgtacatgt |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31926474 |
aatgtgagaattaaaggtgaggttaagacaatacattatagaggatgatagttttggcctggatatatacggtatgatgacattggtataatgtacatgt |
31926375 |
T |
|
| Q |
316 |
aaatcatgtgtgatgaattcttgaaaattcaatataaaatacaaacaagttaacacacatggtattattataaagacaaataggtcgttggtcgtttaca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31926374 |
aaatcatgtgtgatgaattcttgaaaattcaatataaaatacaaacaagttaacacacatggtattattataaagacaaataggtcgttggtcgtttaca |
31926275 |
T |
|
| Q |
416 |
atttcttgataacaaactttggtcagttactttcagttatatatgcatgaaaaatattcagt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31926274 |
atttcttgataacaaactttggtcagttactttcagttatatatgcatgaaaaataatcagt |
31926213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University