View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9004_low_8 (Length: 408)
Name: NF9004_low_8
Description: NF9004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9004_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 12933955 - 12933811
Alignment:
| Q |
18 |
tgtcttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataa |
116 |
Q |
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| T |
12933955 |
tgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaaccatgtag |
12933857 |
T |
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| Q |
117 |
atctcctcttccaaatctccatgaagaaatgcagttttcacatcca |
162 |
Q |
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| T |
12933856 |
atctcttcatctaaatctccatgaagaaatgcagtctttacatcca |
12933811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
102 |
ggttgctccatataaatctcctcttccaaatctccatg |
139 |
Q |
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| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 14177225 - 14177081
Alignment:
| Q |
18 |
tgtcttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataa |
116 |
Q |
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| T |
14177225 |
tgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaaccatgtag |
14177127 |
T |
|
| Q |
117 |
atctcctcttccaaatctccatgaagaaatgcagttttcacatcca |
162 |
Q |
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| T |
14177126 |
atctcttcatctaaatctccatgaagaaatgcagtctttacatcca |
14177081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 28608650 - 28608794
Alignment:
| Q |
18 |
tgtcttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataa |
116 |
Q |
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| T |
28608650 |
tgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaaccatgtag |
28608748 |
T |
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| Q |
117 |
atctcctcttccaaatctccatgaagaaatgcagttttcacatcca |
162 |
Q |
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||||| || || ||||||||||||||||||||||| || ||||||| |
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| T |
28608749 |
atctcttcatctaaatctccatgaagaaatgcagtctttacatcca |
28608794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
| Q |
101 |
tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt |
154 |
Q |
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|
| T |
20706234 |
tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt |
20706182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
| Q |
132 |
tctccatgaagaaatgcagttttcacatccaactgctc |
169 |
Q |
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| T |
6692123 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
6692086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 796698 - 796735
Alignment:
| Q |
132 |
tctccatgaagaaatgcagttttcacatccaactgctc |
169 |
Q |
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| T |
796698 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
796735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
| Q |
132 |
tctccatgaagaaatgcagttttcacatccaactgctc |
169 |
Q |
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|||||||||||||||||||| |||||||| |||||||| |
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| T |
8273129 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
8273092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
| Q |
132 |
tctccatgaagaaatgcagttttcacatccaactgctc |
169 |
Q |
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| T |
19944073 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
19944036 |
T |
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