View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9004_low_9 (Length: 340)

Name: NF9004_low_9
Description: NF9004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9004_low_9
NF9004_low_9
[»] chr1 (8 HSPs)
chr1 (11-234)||(4569287-4569510)
chr1 (11-234)||(14704437-14704660)
chr1 (24-234)||(49042667-49042877)
chr1 (11-234)||(49058518-49058738)
chr1 (230-323)||(4569172-4569265)
chr1 (230-323)||(14704322-14704415)
chr1 (244-323)||(49042542-49042621)
chr1 (245-296)||(49058424-49058475)
[»] chr7 (1 HSPs)
chr7 (11-301)||(22642789-22643076)
[»] chr3 (8 HSPs)
chr3 (11-234)||(9763635-9763852)
chr3 (11-234)||(9778088-9778305)
chr3 (11-234)||(9769775-9769992)
chr3 (11-234)||(9783793-9784010)
chr3 (234-303)||(9763886-9763954)
chr3 (234-303)||(9770026-9770094)
chr3 (234-303)||(9778339-9778407)
chr3 (234-303)||(9784044-9784112)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 4569510 - 4569287
Alignment:
Q  11 taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4569510 taattcttattgttatccttctgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac 4569411  T
Q  111 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccaccaacattgctattatttcctttgccgtc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4569410 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgctgcaccaccaacattgctattatttcctttgccgtc 4569311  T
Q  211 catagttcaaaatgttcacagaaa 234  Q
    ||||||||||||||||||||||||    
T  4569310 catagttcaaaatgttcacagaaa 4569287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 14704660 - 14704437
Alignment:
Q  11 taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14704660 taattcttattgttatccttctgagcagcatgcaaatcagcaaaatagcccttaggacttttctcaaattgctcccttgaaatgtttgatccatctccac 14704561  T
Q  111 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccaccaacattgctattatttcctttgccgtc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14704560 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgctgcaccaccaacattgctattatttcctttgccgtc 14704461  T
Q  211 catagttcaaaatgttcacagaaa 234  Q
    ||||||||||||||||||||||||    
T  14704460 catagttcaaaatgttcacagaaa 14704437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 49042877 - 49042667
Alignment:
Q  24 tatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccaccaggagctttcat 123  Q
    ||||||| ||| ||||||||||||||||||||||||| |  || ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  49042877 tatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaaattcctcccttgaaatgttggatccatctccaccaggagctttcat 49042778  T
Q  124 tgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccaccaacattgctattatttcctttgccgtccatagttcaaaat 223  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49042777 tgtatcacctttagtagtagcaccaacattgtctttgggattgtttgctgcaccaccaccaacattgctattatttcctttgccgtccatagttcaaaat 49042678  T
Q  224 gttcacagaaa 234  Q
    |||||||||||    
T  49042677 gttcacagaaa 49042667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 49058738 - 49058518
Alignment:
Q  11 taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac 110  Q
    |||||||| |||||||| || ||| ||| ||||||||||||||||||||| |  || |||||| |||||| ||||||||||||||| ||||||| |||||    
T  49058738 taattcttcttgttatctttttgagcagtatgcaaatcagcaaaatagccttgtgggtttttcacaaattcctcccttgaaatgttggatccatttccac 49058639  T
Q  111 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccaccaacattgctattatttcctttgccgtc 210  Q
    |||||||||||||||||||||| ||||| ||| | ||||| ||||| |||||||||||||| |||||| ||||||||||||    |||||||||||||||    
T  49058638 caggagctttcattgtatcacccttagtggtactgccaacgttgtccttgggattgtttgcagcagcagcaccaacattgc---catttcctttgccgtc 49058542  T
Q  211 catagttcaaaatgttcacagaaa 234  Q
    ||||||||||||||||||||||||    
T  49058541 catagttcaaaatgttcacagaaa 49058518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 4569265 - 4569172
Alignment:
Q  230 agaaaaggtttgtttttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaacattattgtgttgaagctgatctc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4569265 agaaaaggtttgtttttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaacattattgtgttgaagctgatctc 4569172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 14704415 - 14704322
Alignment:
Q  230 agaaaaggtttgtttttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaacattattgtgttgaagctgatctc 323  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14704415 agaaaaggtttgtttttcaagggagggtatggataaaaaattgagcagctagttatggctttatatagaacattattgtgttgaagctgatctc 14704322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 49042621 - 49042542
Alignment:
Q  244 tttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaacattattgtgttgaagctgatctc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49042621 tttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaacattattgtgttgaagctgatctc 49042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 49058475 - 49058424
Alignment:
Q  245 ttcaagggagggtatggataagaaattgagcagctagttatggctttatata 296  Q
    |||||||||||||||| |||| ||||| ||||||||||| || |||||||||    
T  49058475 ttcaagggagggtatgaataataaattaagcagctagttgtgtctttatata 49058424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 22643076 - 22642789
Alignment:
Q  11 taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac 110  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||| |||    
T  22643076 taattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtggatttttctcaaattgctcccttgaaatgttggatccatcttcac 22642977  T
Q  111 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccaccaacattgctattatttcctttgccgtc 210  Q
    ||||||||||||| |||||||||||||| ||| | ||||| ||||| |||| ||||||||| |||||||      ||||  | | ||||||||||  |||    
T  22642976 caggagctttcatcgtatcacctttagtggtactgccaacgttgtccttggcattgtttgcagcagcac------cattattgtcatttcctttgttgtc 22642883  T
Q  211 catagttcaaaatgttcacagaa---aaggtttgtttttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaaca 301  Q
    |||||||||||||| ||| ||||   ||||||||| ||||||||||||||||| ||||||||  |||||||||||| || ||||||||||||||    
T  22642882 catagttcaaaatgatcaaagaaaacaaggtttgtgtttcaagggagggtatgaataagaaaccgagcagctagttgtgtctttatatagaaca 22642789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 9763635 - 9763852
Alignment:
Q  11 taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac 110  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |    
T  9763635 taattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatccatctcctc 9763734  T
Q  111 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccaccaacattgctattatttcctttgccgtc 210  Q
    |||| |||||||||| |||| | ||||| ||| | ||||| ||||| || ||||||||   ||||||| ||||||||||||    |||||||||||||||    
T  9763735 caggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtt---tgcagcagcaccaacattgc---catttcctttgccgtc 9763828  T
Q  211 catagttcaaaatgttcacagaaa 234  Q
    |||||||||||||| ||| |||||    
T  9763829 catagttcaaaatgatcaaagaaa 9763852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 9778088 - 9778305
Alignment:
Q  11 taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac 110  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |    
T  9778088 taattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatccatctcctc 9778187  T
Q  111 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccaccaacattgctattatttcctttgccgtc 210  Q
    |||| |||||||||| |||| | ||||| ||| | ||||| ||||| || ||||||||   ||||||| ||||||||||||    |||||||||||||||    
T  9778188 caggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtt---tgcagcagcaccaacattgc---catttcctttgccgtc 9778281  T
Q  211 catagttcaaaatgttcacagaaa 234  Q
    |||||||||||||| ||| |||||    
T  9778282 catagttcaaaatgatcaaagaaa 9778305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 9769775 - 9769992
Alignment:
Q  11 taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac 110  Q
    |||||||| ||  ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |    
T  9769775 taattcttcttcctatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatccatctcctc 9769874  T
Q  111 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccaccaacattgctattatttcctttgccgtc 210  Q
    |||| |||||||||| |||| | ||||| ||| | ||||| ||||| || ||||||||   |||||||  |||||||||||    |||||||||||||||    
T  9769875 caggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtt---tgcagcagaaccaacattgc---catttcctttgccgtc 9769968  T
Q  211 catagttcaaaatgttcacagaaa 234  Q
    |||||||||||||| ||| |||||    
T  9769969 catagttcaaaatgatcaaagaaa 9769992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 9783793 - 9784010
Alignment:
Q  11 taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac 110  Q
    |||||||| ||  ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |    
T  9783793 taattcttcttcctatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatccatctcctc 9783892  T
Q  111 caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccaccaacattgctattatttcctttgccgtc 210  Q
    |||| |||||||||| |||| | ||||| ||| | ||||| ||||| || ||||||||   |||||||  |||||||||||    |||||||||||||||    
T  9783893 caggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtt---tgcagcagaaccaacattgc---catttcctttgccgtc 9783986  T
Q  211 catagttcaaaatgttcacagaaa 234  Q
    |||||||||||||| ||| |||||    
T  9783987 catagttcaaaatgatcaaagaaa 9784010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 9763886 - 9763954
Alignment:
Q  234 aaggtttgtttttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaacatt 303  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||| || ||||||||||||||||    
T  9763886 aaggtttgtgtttcaaggg-gggtatgaataagaaattgagcagctagttgtgtctttatatagaacatt 9763954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 9770026 - 9770094
Alignment:
Q  234 aaggtttgtttttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaacatt 303  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||| || ||||||||||||||||    
T  9770026 aaggtttgtgtttcaaggg-gggtatgaataagaaattgagcagctagttgtgtctttatatagaacatt 9770094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 9778339 - 9778407
Alignment:
Q  234 aaggtttgtttttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaacatt 303  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||| || ||||||||||||||||    
T  9778339 aaggtttgtgtttcaaggg-gggtatgaataagaaattgagcagctagttgtgtctttatatagaacatt 9778407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 9784044 - 9784112
Alignment:
Q  234 aaggtttgtttttcaagggagggtatggataagaaattgagcagctagttatggctttatatagaacatt 303  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||| || ||||||||||||||||    
T  9784044 aaggtttgtgtttcaaggg-gggtatgaataagaaattgagcagctagttgtgtctttatatagaacatt 9784112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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