View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_high_106 (Length: 207)

Name: NF9005_high_106
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_high_106
NF9005_high_106
[»] chr3 (7 HSPs)
chr3 (1-128)||(26497081-26497210)
chr3 (173-207)||(1687540-1687574)
chr3 (173-207)||(1016933-1016967)
chr3 (173-207)||(22851856-22851890)
chr3 (173-207)||(27070986-27071020)
chr3 (173-207)||(29677634-29677668)
chr3 (173-207)||(50287426-50287460)
[»] chr4 (14 HSPs)
chr4 (173-205)||(25734472-25734504)
chr4 (173-207)||(2055145-2055179)
chr4 (173-207)||(17993235-17993269)
chr4 (173-207)||(19496392-19496426)
chr4 (173-207)||(26017312-26017346)
chr4 (173-207)||(28264801-28264835)
chr4 (173-207)||(28812533-28812567)
chr4 (173-207)||(31208608-31208642)
chr4 (173-207)||(33173969-33174003)
chr4 (173-207)||(44490477-44490511)
chr4 (173-207)||(48707951-48707985)
chr4 (173-207)||(49118769-49118803)
chr4 (174-207)||(48149360-48149393)
chr4 (173-205)||(56555392-56555424)
[»] chr1 (17 HSPs)
chr1 (173-205)||(7553265-7553297)
chr1 (173-207)||(7651820-7651854)
chr1 (173-207)||(16508146-16508180)
chr1 (173-207)||(18782336-18782370)
chr1 (173-207)||(18892218-18892252)
chr1 (173-207)||(19274419-19274453)
chr1 (173-207)||(22351074-22351108)
chr1 (173-207)||(26069752-26069786)
chr1 (173-207)||(28425312-28425346)
chr1 (173-207)||(37216756-37216790)
chr1 (173-207)||(41105876-41105910)
chr1 (173-207)||(48802280-48802314)
chr1 (173-207)||(52350142-52350176)
chr1 (174-207)||(23767661-23767694)
chr1 (173-205)||(9878733-9878765)
chr1 (175-207)||(25800799-25800831)
chr1 (118-158)||(52146827-52146867)
[»] scaffold0338 (1 HSPs)
scaffold0338 (173-207)||(5758-5792)
[»] scaffold0031 (1 HSPs)
scaffold0031 (173-207)||(101248-101282)
[»] chr8 (14 HSPs)
chr8 (173-207)||(259867-259901)
chr8 (173-207)||(656020-656054)
chr8 (173-207)||(841755-841789)
chr8 (173-207)||(3876066-3876100)
chr8 (173-207)||(22683937-22683971)
chr8 (173-207)||(22684206-22684240)
chr8 (173-207)||(24193530-24193564)
chr8 (173-207)||(36400019-36400053)
chr8 (173-207)||(37933531-37933565)
chr8 (173-207)||(41536476-41536510)
chr8 (173-205)||(440700-440732)
chr8 (173-205)||(2533132-2533164)
chr8 (173-205)||(23935122-23935154)
chr8 (173-205)||(33651701-33651733)
[»] chr7 (8 HSPs)
chr7 (173-207)||(30972159-30972193)
chr7 (173-207)||(39033921-39033955)
chr7 (173-207)||(42888764-42888798)
chr7 (173-207)||(44544269-44544303)
chr7 (173-207)||(44800657-44800691)
chr7 (173-207)||(47219303-47219337)
chr7 (173-207)||(47294240-47294274)
chr7 (173-207)||(47294509-47294543)
[»] chr6 (4 HSPs)
chr6 (173-207)||(6503578-6503612)
chr6 (173-207)||(17942898-17942932)
chr6 (173-207)||(30379175-30379209)
chr6 (173-205)||(26393258-26393290)
[»] chr5 (8 HSPs)
chr5 (173-207)||(17002403-17002437)
chr5 (173-207)||(20517018-20517052)
chr5 (173-207)||(38964331-38964365)
chr5 (173-207)||(41282202-41282236)
chr5 (174-207)||(6251854-6251887)
chr5 (174-207)||(16095910-16095943)
chr5 (178-207)||(33760424-33760453)
chr5 (173-205)||(1052396-1052428)
[»] chr2 (8 HSPs)
chr2 (173-207)||(3358099-3358133)
chr2 (173-207)||(7297479-7297513)
chr2 (173-207)||(12759996-12760030)
chr2 (173-207)||(41177984-41178018)
chr2 (173-207)||(41178266-41178300)
chr2 (174-207)||(9276732-9276765)
chr2 (174-207)||(9331914-9331947)
chr2 (174-207)||(22066639-22066672)


Alignment Details
Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26497081 - 26497210
Alignment:
Q  1 taaacttatcaatataataatgaagtgctagtttggannnnnnnnnnnnn--acaagaaatcgaaacttatgaaataaatatggtagagactaatttcac 98  Q
    |||||||||||||||||||||||||||||||||||||               |||| |||||||||||||||||||||||||||||||||||||||||||    
T  26497081 taaacttatcaatataataatgaagtgctagtttggatttatttatttttttacaaaaaatcgaaacttatgaaataaatatggtagagactaatttcac 26497180  T
Q  99 caaaaaatatttacacaacacaatatattt 128  Q
    |||||| |||||||||||||||||||||||    
T  26497181 caaaaattatttacacaacacaatatattt 26497210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 1687540 - 1687574
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||||||||||||||||||||||||||||    
T  1687540 caaagtcgtcatttaagtttcaaaagtcccaaaca 1687574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 1016933 - 1016967
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  1016933 caaagtcgtcctttaagtttcaaaagtcccaaaca 1016967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 22851856 - 22851890
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  22851856 caaagtcgtcctttaagtttcaaaagtcccaaaca 22851890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 27071020 - 27070986
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  27071020 caaagtcgtcctttaagtttcaaaagtcccaaaca 27070986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 29677668 - 29677634
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  29677668 caaagtcgtcctttaagtttcaaaagtcccaaaca 29677634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 50287426 - 50287460
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  50287426 caaagtcgtcctttaagtttcaaaagtcccaaaca 50287460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 25734504 - 25734472
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    |||||||||||||||||||||||||||||||||    
T  25734504 caaagtcgtcatttaagtttcaaaagtcccaaa 25734472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 2055145 - 2055179
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||| ||||||||||||||||||||||||||||    
T  2055145 caaagtggtcatttaagtttcaaaagtcccaaaca 2055179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 17993269 - 17993235
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  17993269 caaagtcgtcctttaagtttcaaaagtcccaaaca 17993235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 19496426 - 19496392
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  19496426 caaagtcgtcctttaagtttcaaaagtcccaaaca 19496392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 26017312 - 26017346
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  26017312 caaagtcgtcctttaagtttcaaaagtcccaaaca 26017346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 28264835 - 28264801
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  28264835 caaagtcgtcctttaagtttcaaaagtcccaaaca 28264801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 28812567 - 28812533
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||| ||||||||||||||||||||||||||||    
T  28812567 caaagtggtcatttaagtttcaaaagtcccaaaca 28812533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 31208608 - 31208642
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  31208608 caaagtcgtcctttaagtttcaaaagtcccaaaca 31208642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 33173969 - 33174003
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||||||||||||||||||||| ||||||    
T  33173969 caaagtcgtcatttaagtttcaaaagtctcaaaca 33174003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 44490511 - 44490477
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  44490511 caaagtcgtcctttaagtttcaaaagtcccaaaca 44490477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 48707985 - 48707951
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  48707985 caaagtcgtcctttaagtttcaaaagtcccaaaca 48707951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 49118803 - 49118769
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  49118803 caaagtcgtcctttaagtttcaaaagtcccaaaca 49118769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 48149360 - 48149393
Alignment:
Q  174 aaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    ||||| ||||||||||||||||||||||||||||    
T  48149360 aaagtagtcatttaagtttcaaaagtcccaaaca 48149393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 56555424 - 56555392
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    |||| ||||||||||||||||||||||||||||    
T  56555424 caaaatcgtcatttaagtttcaaaagtcccaaa 56555392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 7553297 - 7553265
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    |||||||||||||||||||||||||||||||||    
T  7553297 caaagtcgtcatttaagtttcaaaagtcccaaa 7553265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 7651854 - 7651820
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  7651854 caaagtcgtcctttaagtttcaaaagtcccaaaca 7651820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 16508180 - 16508146
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  16508180 caaagtcgtcctttaagtttcaaaagtcccaaaca 16508146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 18782370 - 18782336
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||| ||||||||||||||||||||||||||||    
T  18782370 caaagtggtcatttaagtttcaaaagtcccaaaca 18782336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 18892218 - 18892252
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||||||||||||||||||||| ||||||    
T  18892218 caaagtcgtcatttaagtttcaaaagtctcaaaca 18892252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 19274419 - 19274453
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  19274419 caaagtcgtcctttaagtttcaaaagtcccaaaca 19274453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 22351074 - 22351108
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  22351074 caaagtcgtcctttaagtttcaaaagtcccaaaca 22351108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 26069752 - 26069786
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||||||||||||||||||||| ||||||    
T  26069752 caaagtcgtcatttaagtttcaaaagtcacaaaca 26069786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 28425312 - 28425346
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  28425312 caaagtcgtcctttaagtttcaaaagtcccaaaca 28425346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 37216756 - 37216790
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  37216756 caaagtcgtcctttaagtttcaaaagtcccaaaca 37216790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 41105876 - 41105910
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  41105876 caaagtcgtcctttaagtttcaaaagtcccaaaca 41105910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 48802280 - 48802314
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  48802280 caaagtcgtcctttaagtttcaaaagtcccaaaca 48802314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 52350176 - 52350142
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  52350176 caaagtcgtcctttaagtttcaaaagtcccaaaca 52350142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 23767694 - 23767661
Alignment:
Q  174 aaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  23767694 aaagtcgtcctttaagtttcaaaagtcccaaaca 23767661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 9878733 - 9878765
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    |||||| ||||||||||||||||||||||||||    
T  9878733 caaagtggtcatttaagtttcaaaagtcccaaa 9878765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 25800831 - 25800799
Alignment:
Q  175 aagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||| ||||||||||||||||||||||||    
T  25800831 aagtcgtcctttaagtttcaaaagtcccaaaca 25800799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 52146827 - 52146867
Alignment:
Q  118 acaatatatttttggtcaaatgcatgtaaatgttctttaag 158  Q
    ||||||| ||||||||||||||||| ||||||| |||||||    
T  52146827 acaatatttttttggtcaaatgcatctaaatgtcctttaag 52146867  T

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Target: scaffold0338 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 5792 - 5758
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  5792 caaagtcgtcctttaagtttcaaaagtcccaaaca 5758  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 101282 - 101248
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  101282 caaagtcgtcctttaagtttcaaaagtcccaaaca 101248  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 259867 - 259901
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  259867 caaagtcgtcctttaagtttcaaaagtcccaaaca 259901  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 656054 - 656020
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  656054 caaagtcgtcctttaagtttcaaaagtcccaaaca 656020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 841789 - 841755
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  841789 caaagtcgtcctttaagtttcaaaagtcccaaaca 841755  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 3876100 - 3876066
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  3876100 caaagtcgtcctttaagtttcaaaagtcccaaaca 3876066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 22683937 - 22683971
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  22683937 caaagtcgtcctttaagtttcaaaagtcccaaaca 22683971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 22684240 - 22684206
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  22684240 caaagtcgtcctttaagtttcaaaagtcccaaaca 22684206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 24193564 - 24193530
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||| ||||||||||||||||||||||||||||    
T  24193564 caaagtggtcatttaagtttcaaaagtcccaaaca 24193530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 36400019 - 36400053
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  36400019 caaagtcgtcctttaagtttcaaaagtcccaaaca 36400053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 37933531 - 37933565
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  37933531 caaagtcgtcctttaagtttcaaaagtcccaaaca 37933565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 41536476 - 41536510
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  41536476 caaagtcgtcttttaagtttcaaaagtcccaaaca 41536510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 440700 - 440732
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    ||||||||||||||||||||||||||| |||||    
T  440700 caaagtcgtcatttaagtttcaaaagttccaaa 440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 2533132 - 2533164
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    |||||||||| ||||||||||||||||||||||    
T  2533132 caaagtcgtcctttaagtttcaaaagtcccaaa 2533164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 23935122 - 23935154
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    |||||| ||||||||||||||||||||||||||    
T  23935122 caaagtggtcatttaagtttcaaaagtcccaaa 23935154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 33651701 - 33651733
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    |||||||||| ||||||||||||||||||||||    
T  33651701 caaagtcgtcttttaagtttcaaaagtcccaaa 33651733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 30972193 - 30972159
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  30972193 caaagtcgtcttttaagtttcaaaagtcccaaaca 30972159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 39033921 - 39033955
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  39033921 caaagtcgtcctttaagtttcaaaagtcccaaaca 39033955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 42888764 - 42888798
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  42888764 caaagtcgtcctttaagtttcaaaagtcccaaaca 42888798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 44544269 - 44544303
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  44544269 caaagtcgtcctttaagtttcaaaagtcccaaaca 44544303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 44800691 - 44800657
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||| ||||||||||||||||||||||||||||    
T  44800691 caaagtggtcatttaagtttcaaaagtcccaaaca 44800657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 47219337 - 47219303
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  47219337 caaagtcgtcctttaagtttcaaaagtcccaaaca 47219303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 47294240 - 47294274
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  47294240 caaagtcgtcctttaagtttcaaaagtcccaaaca 47294274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 47294543 - 47294509
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  47294543 caaagtcgtcctttaagtttcaaaagtcccaaaca 47294509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 6503578 - 6503612
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  6503578 caaagtcgtcctttaagtttcaaaagtcccaaaca 6503612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 17942898 - 17942932
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||| ||||||||||||||||||||||||||||    
T  17942898 caaagtggtcatttaagtttcaaaagtcccaaaca 17942932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 30379209 - 30379175
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||| ||||||||||||||||||||||||||||    
T  30379209 caaagtggtcatttaagtttcaaaagtcccaaaca 30379175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 26393290 - 26393258
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    |||||||||| ||||||||||||||||||||||    
T  26393290 caaagtcgtcctttaagtttcaaaagtcccaaa 26393258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 17002437 - 17002403
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||| ||||||||||||||||||||||||||||    
T  17002437 caaagtggtcatttaagtttcaaaagtcccaaaca 17002403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 20517018 - 20517052
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  20517018 caaagtcgtcctttaagtttcaaaagtcccaaaca 20517052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 38964365 - 38964331
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  38964365 caaagtcgtcctttaagtttcaaaagtcccaaaca 38964331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 41282202 - 41282236
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  41282202 caaagtcgtcctttaagtttcaaaagtcccaaaca 41282236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 6251854 - 6251887
Alignment:
Q  174 aaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    ||||||||||||||||||||||||||| ||||||    
T  6251854 aaagtcgtcatttaagtttcaaaagtctcaaaca 6251887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 16095910 - 16095943
Alignment:
Q  174 aaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  16095910 aaagtcgtcctttaagtttcaaaagtcccaaaca 16095943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 33760424 - 33760453
Alignment:
Q  178 tcgtcatttaagtttcaaaagtcccaaaca 207  Q
    ||||||||||||||||||||||||||||||    
T  33760424 tcgtcatttaagtttcaaaagtcccaaaca 33760453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 1052396 - 1052428
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaa 205  Q
    |||||||||| ||||||||||||||||||||||    
T  1052396 caaagtcgtcctttaagtttcaaaagtcccaaa 1052428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 3358099 - 3358133
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  3358099 caaagtcgtcctttaagtttcaaaagtcccaaaca 3358133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 7297513 - 7297479
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  7297513 caaagtcgtcttttaagtttcaaaagtcccaaaca 7297479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 12760030 - 12759996
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  12760030 caaagtcgtcttttaagtttcaaaagtcccaaaca 12759996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 41177984 - 41178018
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  41177984 caaagtcgtcctttaagtttcaaaagtcccaaaca 41178018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 41178300 - 41178266
Alignment:
Q  173 caaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  41178300 caaagtcgtcctttaagtttcaaaagtcccaaaca 41178266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 9276765 - 9276732
Alignment:
Q  174 aaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  9276765 aaagtcgtcctttaagtttcaaaagtcccaaaca 9276732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 9331947 - 9331914
Alignment:
Q  174 aaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  9331947 aaagtcgtcctttaagtttcaaaagtcccaaaca 9331914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 22066672 - 22066639
Alignment:
Q  174 aaagtcgtcatttaagtttcaaaagtcccaaaca 207  Q
    ||||||||||||||| ||||||||||||||||||    
T  22066672 aaagtcgtcatttaaatttcaaaagtcccaaaca 22066639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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