View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_high_13 (Length: 586)
Name: NF9005_high_13
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 9 - 572
Target Start/End: Original strand, 35444907 - 35445466
Alignment:
| Q |
9 |
aagcagagaagaagaactgatctagacacacacacagacatggcttcatcaagaggtggtagtaagatcaaagaattgagtgcagagagaattgataagt |
108 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35444907 |
aagcaaagaagaagaactga----gacacacacacagacatggcttcatcaagaggtggtagtaagatcaaagaattgagtgcagagagaattgataagt |
35445002 |
T |
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| Q |
109 |
catttgctgcgtccttgaaggctcacaagacaccagagaaactctaccttatagaaaagaacaacaaaagcaatcctccagaagttatcatcagctttcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445003 |
catttgctgcgtccttgaaggctcacaagacaccagagaaactctaccttatagaaaagaacaacaaaagcaatcctccagaagttatcatcagctttcc |
35445102 |
T |
|
| Q |
209 |
agcatcaggtgttttcaatgattggtattccaaaacaacttttggtgaaactgaaatagatcttaaactatttcgttcacttaaaagcattggtaacaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445103 |
agcatcaggtgttttcaatgattggtattccaaaacaacttttggtgaaactgaaatagatcttaaactatttcgttcacttaaaagcattggtaacaat |
35445202 |
T |
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| Q |
309 |
gaagctgctaaggttaatcaattttttcaccaaagattcaaagatattttggcaaagtcaacacttgaagaagaggtattatatatgtgaaaatacatac |
408 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35445203 |
gaagctgctaaggttaatcaattttttctccaaagattcaaagatattttggcaaagtcaacacttgaagaagaggtattatatatgtgaaaatacacac |
35445302 |
T |
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| Q |
409 |
atctctctatcttaccatgtatgatatattacgcaaacttcatttttcagttttctttccttttatagcatctatacataactgccctatccattaatgc |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35445303 |
atctctctatcttaccatgtatgatatattacgcaaacttcatttttcagttttctttccttttatagcatctatacacaactgccctatccattaatgc |
35445402 |
T |
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| Q |
509 |
taaaaatgaacaaaacacaactcaaaattagtttgagcattagagactcaattaggcaatttat |
572 |
Q |
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| T |
35445403 |
taaaaatgaacaaaacacaactcaaaattagtttgagcattagagactcaattaggcaatttat |
35445466 |
T |
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