View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_high_15 (Length: 561)
Name: NF9005_high_15
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 539
Target Start/End: Complemental strand, 30620656 - 30620115
Alignment:
| Q |
17 |
aacaactccaaggatgcttttctgttgattttctctaatcaagcttctcttggttggtgtgtttgtttttctctctcgtgcacttactagtgatcctttt |
116 |
Q |
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| T |
30620656 |
aacaactccaaggatgctttcctgttgattttctctaatcaagcttctcttggttggtgtgtttgttt--ctctctcgtgcacttactagtgatcctttt |
30620559 |
T |
|
| Q |
117 |
tcttt------------attaaggttaacttttatcagtcattgtaatattgtccaatctctcattctcatgactgttcattgtgattttctgattctga |
204 |
Q |
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| T |
30620558 |
tcttttattctttctttattaaggttaacttttatcagtcattgtaatattgtccaatctctcattctcatgactgttcattgtgattttctgattctga |
30620459 |
T |
|
| Q |
205 |
tcaatttattagtccatttagattttgtaccatgaatctcgtgattttttcgaccttgttcttcttagcagtttaaaatttctctatgatcgagcaacta |
304 |
Q |
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| T |
30620458 |
tcaatttattagtccatttagattttgtaccatgaatctcgtgattttttcgaccttgttcttcttagcagtttaaaatttctctatgatcgagcaacta |
30620359 |
T |
|
| Q |
305 |
gatatggtttaaagtactcttaactagaaccctaaaacataatttaccgaagcttttattttatatagcataatataatttacctaagtttaatccacta |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30620358 |
gatatggtttaaagtactcttaactagaaccctaaaacataatttaccgaagcttttattttatatagcataatataatttacctaagtttaatccacta |
30620259 |
T |
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| Q |
405 |
aattcaattaaattatttaaacttatgcatgcaatgtattttttagagaattcaatgaagccatgttggcttacagtagtagttcctcaatgtaacaagc |
504 |
Q |
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| T |
30620258 |
aattcaattaaattatttaaacttatgcatgcaatgtattttttagagaattcaatgaagccatgttggcttacagtagtagttcctcaatgtaacaagc |
30620159 |
T |
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| Q |
505 |
atcgc---------cttctgaggtatcacctacatcattgttta |
539 |
Q |
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| T |
30620158 |
atcgccttccacttcttctgaggtatcacctacatcattgttta |
30620115 |
T |
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