View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_high_27 (Length: 461)
Name: NF9005_high_27
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 41551235 - 41551670
Alignment:
| Q |
18 |
agttttcctcttcttcaacatcagtggcagattgttgagagttttagagctcagatctcgcagcggagtcgggatcgtttgcttgatcggggacttcgta |
117 |
Q |
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| T |
41551235 |
agttttcctcttcttcaacatcagtggcagattgttgagagttttagagctcagatctcgcagcggagtcgggatcgtttgcttgatcggggacttcgta |
41551334 |
T |
|
| Q |
118 |
ttgatgcttatgctgatgcgcttgctgctgtagctgttatcgatgaatttcagccggagaaggtaatgttgtttgtttatcagtctgaattgggaatttg |
217 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41551335 |
ttgatgcttatgctgatgcacttgctgctgtagccgttatcgatgaatttcagccggagaaggtaatgttgtttgtttatcagtctgaattgggaatttg |
41551434 |
T |
|
| Q |
218 |
ggttgaggatgggtggttagaatgtgtttagttgctttcaatttgtggatttatgtgatttgagcaatgttgttaaataatagctgtagcggcgttgtag |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
41551435 |
ggttgaggatgggtagttagaatgtgtttagttgctttcaatttgtggatttatgtgatttgagcaatgttgttaaatagtagctgtagcagctttgtag |
41551534 |
T |
|
| Q |
318 |
ggtagcggaatttagtacaaagtgttgtcaaatagtggtgtatcgtccccattgttacagtctagtggtttggctgtgggacattttatgtggaatccgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41551535 |
ggtagcggaatttagtacaaagtgttgtcaaatagtggtgtatcatccccattgttacagtctagtggtttggctgtggtacattttatgtggaatccgg |
41551634 |
T |
|
| Q |
418 |
gatccgggtctctacacttccccgtccccgtctgtg |
453 |
Q |
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| T |
41551635 |
gatctgggtctctacacttccccgtccccgtctgtg |
41551670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 355
Target Start/End: Original strand, 1118943 - 1118971
Alignment:
| Q |
327 |
atttagtacaaagtgttgtcaaatagtgg |
355 |
Q |
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| T |
1118943 |
atttagtacaaagtgttgtcaaatagtgg |
1118971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 356
Target Start/End: Original strand, 26373118 - 26373147
Alignment:
| Q |
327 |
atttagtacaaagtgttgtcaaatagtggt |
356 |
Q |
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| T |
26373118 |
atttagtacaaagtgttgtcaaatagtggt |
26373147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 355
Target Start/End: Complemental strand, 2730864 - 2730836
Alignment:
| Q |
327 |
atttagtacaaagtgttgtcaaatagtgg |
355 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2730864 |
atttagtacaaagtgttgtcaaatagtgg |
2730836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 42492331 - 42492303
Alignment:
| Q |
326 |
aatttagtacaaagtgttgtcaaatagtg |
354 |
Q |
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| T |
42492331 |
aatttagtacaaagtgttgtcaaatagtg |
42492303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 355
Target Start/End: Complemental strand, 23165577 - 23165549
Alignment:
| Q |
327 |
atttagtacaaagtgttgtcaaatagtgg |
355 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23165577 |
atttagtacaaagtgttgtcaaatagtgg |
23165549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 355
Target Start/End: Original strand, 48957895 - 48957923
Alignment:
| Q |
327 |
atttagtacaaagtgttgtcaaatagtgg |
355 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
48957895 |
atttagtacaaagtgttgtcaaatagtgg |
48957923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 355
Target Start/End: Complemental strand, 28044740 - 28044712
Alignment:
| Q |
327 |
atttagtacaaagtgttgtcaaatagtgg |
355 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28044740 |
atttagtacaaagtgttgtcaaatagtgg |
28044712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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