View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_high_31 (Length: 455)
Name: NF9005_high_31
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 14305124 - 14305545
Alignment:
| Q |
16 |
gagacgaaagggatgctttgtttggctaagattgttgagaaggaacagggggagttgcagcggaattgtttgatgactataatggagataacggctgcgg |
115 |
Q |
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| T |
14305124 |
gagacgaaagggatgctttgtttggctaagattgttgagaaggaacagggggagttgcagcggaattgtttgatgactataatggagataacggctgcag |
14305223 |
T |
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| Q |
116 |
ctgaatctaatgctgatcttcgacgtggtgcatttaagaccaactcacctcctgctaaagctgttgtggagcagctgttgaggatacttaaagaggttga |
215 |
Q |
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| T |
14305224 |
ctgaatctaatgctgatcttcgacgaggtgcgtttaagaccaactcacctcctgctaaagctgttgtggagcagctgttgaggatacttaaagaggttga |
14305323 |
T |
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| Q |
216 |
tagcccgttgatgcaaattccggcgattaagtctattggttcgttggctaggacgtttcctgctagagagactcgagtaattgaacctctagtagcacag |
315 |
Q |
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| T |
14305324 |
tagcccgttgatgcaaattccggcgattaagtctattggttcgttggctaggacgtttcctgctagagagactcgagtaattgaacctctagtagcacag |
14305423 |
T |
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| Q |
316 |
ctgagtaatagagacataaatgtagcagatgaagcagccgttgctcttaccaagtttgcttctccagataatttcctatatgtcgagcattctaagaaaa |
415 |
Q |
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| T |
14305424 |
ctgagtaatagagacataaatgtagcagatgaagcagccgttgctcttaccaagtttgcttctccagataatttcctatatgtcgagcattctaagaaaa |
14305523 |
T |
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| Q |
416 |
taattgaatttgatgcagtccc |
437 |
Q |
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| T |
14305524 |
taattgaatttgatgcagtccc |
14305545 |
T |
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