View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9005_high_34 (Length: 444)
Name: NF9005_high_34
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 53460045 - 53460456
Alignment:
| Q |
17 |
agatcaagtttaaaaggcacatcataggataaacaagaaataagaatggtgctgtttaagagtacaaaaccattcaaaatgttgcataaaggaagacatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53460045 |
agatcaagtttaaaaggcacatcataggataaacaagaaataagaatggtgttgtttaagagtacaaaaccattcgaaatgttgcataaaggaagacatc |
53460144 |
T |
|
| Q |
117 |
gaatcagaaagggtcactaactttgtcaagtgtgcaagtttaccatgataaggagttccaaaaggtagagagatattgatatcttgaaaacttgaaacat |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53460145 |
gaatcagaaagggtcacgaactttgtcaagcgtgcaagtttaccatgataaggagttccaataggtagagagatattgatatcttgaaaacttgaaacat |
53460244 |
T |
|
| Q |
217 |
aaatagcattcaaccataattgtagaagtcaaagaaggcaacctgcatttgaaaggtaatcttgactctttgaaagagtgtcatataagtcagtgcaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53460245 |
aaatagcattcaaccataattgtagaagtcaaagaaggcaacctgcatttgaaaggtaatcttgactctttgaaagagtgtcatataagtcagtgcaaaa |
53460344 |
T |
|
| Q |
317 |
ttcataaagccaagtcaaaatgtttacttaatataacatcctttccctcacgaagaaatcaggctaaggaaaggaatgcaatgtactcgttatctgaacc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53460345 |
ttcataaagccaagtcaaaatgtttacttaatataatatcctttccctcacgaagaaatcaggctaaggaaaggaatgcaatgtactcgttatctgaacc |
53460444 |
T |
|
| Q |
417 |
atctttttgctt |
428 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53460445 |
atctttttgctt |
53460456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University