View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9005_high_38 (Length: 432)
Name: NF9005_high_38
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 1979660 - 1980043
Alignment:
| Q |
1 |
ataaacattaatcttgtcattgctttgaggtttatataccagtgcttgtggattggtataaattttattgttcctaccatcagtgcatccatctaataaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1979660 |
ataaacattaatcttgtcattgatttgaggtttatataccagtgcttgtggattggtacaaattttattgttcctaccatcagtgcatccatctaataaa |
1979759 |
T |
|
| Q |
101 |
atgaacaaaatcaaatttttgtaatgtaatgagatgcaatggcgtcaggtgtcatggtgggttgttttcctcatgcgaacttctgttttgtnnnnnnntg |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1979760 |
atgaacaaattcaaatttttgtaatgtaatgagatgcaatggcgtcaggtgtcatggtgggttgttttcctcatgcgaacttctgttttgtaaaaaaatg |
1979859 |
T |
|
| Q |
201 |
cttattgaccgtgaaaagaatttttcctgcttctgaactctagtaacggtttgaaattgatactttagtattccttttttagttacatttttcggtacca |
300 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1979860 |
cttattgagcatgaaaagaatttttcctgcttctgaactctagtaacggtttgaaattgatactttaatattccttttttagttacatttttcggtacca |
1979959 |
T |
|
| Q |
301 |
tgagtggttggtttatttccatcttagaagttacaaccaacgagtggactttgtatgaaaaaagtttcactgataattcctgat |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1979960 |
tgagtggttggtttatttccatcttagaagttacaaccaacgagtggacattgtatgaaaaaagtttcactgataattcctgat |
1980043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 89015 - 89377
Alignment:
| Q |
1 |
ataaacattaatcttgtcattgctttgaggtttatataccagtgcttgtggattggtataaattttattgttcctaccatcagtgcatccatctaataaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
89015 |
ataaacattaatcctgtcattgctttgaggtttatataccagtacttgtggattagttcaaattttgttgttcctaccaccagtgcatccatctaataaa |
89114 |
T |
|
| Q |
101 |
atgaacaaaatcaaatttttgtaatgtaatgagatgcaatggcgtcaggtgtcatggtgggttgttttcctcatgcgaacttct-gttttgtnnnnnnnt |
199 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| |||| ||||| | ||||||||| |||| |||||||||||||| ||||||| |||| | |
|
|
| T |
89115 |
atgaacaaattcaaattttggtaatgtaatgtgatg-gatggcatggggtgtcatgttgggctgttttcctcatgcaaacttctatttttaaaaaaaaat |
89213 |
T |
|
| Q |
200 |
gcttattgaccgtgaaaagaatttttcctgcttctgaactctagtaacggtttgaaattgatactttagtattccttttttagttacatttttcggtacc |
299 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||| | |||| ||||||||||| |||||| |
|
|
| T |
89214 |
gcttattgagcatgaaaag-atttttcctgcttcttaactctagtaacagcttgaaattgatactttagtatctcactttttgttacattttttggtacc |
89312 |
T |
|
| Q |
300 |
atgagt-ggttggtttatttccatcttagaagttacaaccaacgagtggactttgtatgaaaaaa |
363 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
89313 |
atgagtgggttggtttatttccatcttagaagttacaaccagtgagtggactttgtatgaaaaaa |
89377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2002417 - 2002505
Alignment:
| Q |
1 |
ataaacattaatcttgtcattgctttgaggtttatataccagtgcttgtggattggtataaattttattgttcctaccatcagtgcatc |
89 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
2002417 |
ataaacattaatcttgtcattgctttgagatttatataccaatgcttgtgtattggtacaaattttattgttcctaccaatagtgcatc |
2002505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University