View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9005_high_4 (Length: 702)
Name: NF9005_high_4
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 15 - 687
Target Start/End: Original strand, 329776 - 330449
Alignment:
| Q |
15 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329776 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
329875 |
T |
|
| Q |
115 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtagtgaaaaatatacatacaattcgaagcagcaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
329876 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtggtgaaaaatatatatacaattcgaagcagcaa |
329975 |
T |
|
| Q |
215 |
acatacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacatgaagnnnnnnn-accaatagattgcaagtctctgtattttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
329976 |
acatacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacataaagttttttttaccaatagattgcaagtctctgtatttta |
330075 |
T |
|
| Q |
314 |
ctattttacataaaatattaagaattaccaacaatggaatgtgcaaaatttcaatttgataggagaaattgttctatttgtaactgtatgcatctataaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330076 |
ctattttacataaaatattaagaattaccagtaatggaatgtgcaaaatttcaatttgatgggagaaattgttctatttgtaactgtatgcatctataaa |
330175 |
T |
|
| Q |
414 |
cacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaagtatttaaaacacatgaagttagtgtgac |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
330176 |
cacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaagtatttaaaacacatgaagttagtgtggc |
330275 |
T |
|
| Q |
514 |
cttgattgcaacctaagagcacttaagccacgaggctctcctacctaatgaactagtttttggtttgggctcacgggcttaactcttaacaaattactga |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330276 |
cttgattgcaacctaagagcacttaagccacgaggctctcctacctaatgagctagtttttgatttgggctcacgggcttaactcttaacaaattactga |
330375 |
T |
|
| Q |
614 |
caccatatgcgacgacgccaaatatatttgtttctatcttacttcacccggtctcatctcatatataagaaaaa |
687 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
330376 |
catcatatgcgacgacgcctaatatatttgtttctatcttacttcatccggtctcatctcatatatatgaaaaa |
330449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 534 - 578
Target Start/End: Original strand, 37223591 - 37223635
Alignment:
| Q |
534 |
acttaagccacgaggctctcctacctaatgaactagtttttggtt |
578 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
37223591 |
acttaagccattaggctctcccacctaatggactagtttttggtt |
37223635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 48030662 - 48030582
Alignment:
| Q |
80 |
gtgcagagtaaagtcttcttagaagcaggcatctaataggcagcaacagcagagagcagcacaactgcaccaatatacaaa |
160 |
Q |
| |
|
||||| ||||| ||||||| | ||||| ||||| || || |||||||||||||||||||| | ||||| |||| |||||| |
|
|
| T |
48030662 |
gtgcaaagtaatgtcttctcaaaagcatgcatccaagagacagcaacagcagagagcagccaagctgcaacaatttacaaa |
48030582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University