View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_high_57 (Length: 321)
Name: NF9005_high_57
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_57 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 33702280 - 33701974
Alignment:
| Q |
7 |
tttggtggtgatagactagtgttgctgtgttaaacattaatgactaactcaaaactaatgaaataagnnnnnnnnnnn------gtaaatctgatactat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| |
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| T |
33702280 |
tttggtggtgatagactagtgttgctgtgttaaacattaatgactaactgaaaactaatgaattaagtttttttttttttttttgtaaatctgatactat |
33702181 |
T |
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| Q |
101 |
attccttatgactttgaataatggcatgccttgaagtgcaaggctgtctagtaatgtgacatgtattccaattgttcaagctatgataatatcaggttat |
200 |
Q |
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| T |
33702180 |
attccttatgactttgaataatgtcatgccttgaagtgcaaggctgtctagtaatgtgacatgtattccaattgttcaagctatgataatatcaggttat |
33702081 |
T |
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| Q |
201 |
tagcaaatctatctaatgtaacttgttctgttaacttgagggatttaattagtccgtttaatgaaacattaaatatgatttaatcgtgagaccctgttga |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
33702080 |
tagcaagtctatctaatgtaacttgttctgttaacttgagggatttaattagtccgtttaatgaaacattaaatatgatttaatcgtgagattccgttga |
33701981 |
T |
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| Q |
301 |
acaaaat |
307 |
Q |
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||||||| |
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| T |
33701980 |
acaaaat |
33701974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 27510151 - 27510107
Alignment:
| Q |
7 |
tttggtggtgatagactagtgttgctgtgttaaacattaatgact |
51 |
Q |
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| T |
27510151 |
tttgatggtgatagactagtgttgctgtgttaaacattaatgact |
27510107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 12750884 - 12750928
Alignment:
| Q |
249 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagacc |
293 |
Q |
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| T |
12750884 |
ttagtccgtttaatgaaacattaagtataacttaattgtgagacc |
12750928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 10920251 - 10920297
Alignment:
| Q |
246 |
taattagtccgtttaatgaaacattaaatatgatttaatcgtgagac |
292 |
Q |
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| T |
10920251 |
taattagtctgtttaatggaacattaagtatgagttaatcgtgagac |
10920297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 21171382 - 21171328
Alignment:
| Q |
249 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagaccctgttgaaca |
303 |
Q |
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| T |
21171382 |
ttagtccgtttcatggaacattaaatataacttaattgtgagaccccgttgaaca |
21171328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0657 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 1051 - 1096
Alignment:
| Q |
249 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagaccc |
294 |
Q |
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| T |
1051 |
ttagtccgtttaatgaaacattaagtataacttaattgtgagaccc |
1096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 26963698 - 26963743
Alignment:
| Q |
249 |
ttagtccgtttaatgaaacattaaatatgatttaatcgtgagaccc |
294 |
Q |
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| T |
26963698 |
ttagtccgtttaatggaacattaaatataacttaattgtgagaccc |
26963743 |
T |
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