View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_high_64 (Length: 301)
Name: NF9005_high_64
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_64 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 10265355 - 10265621
Alignment:
| Q |
13 |
ctaaataatacttcatctggactgacactatcggatttaaatgcattcatggcatgcttgaatcctggatttctgaacacatttgttgtggctgttcctg |
112 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10265355 |
ctaaatattacttcatctggactgacactatcggatttaaatgcattcatggcatgcttgaatcctggatttctgaacacatttgttgtggctgttcctg |
10265454 |
T |
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| Q |
113 |
ctgtcacacccccttttgtttgtgataatttgctgccgtagacgatgcttaaggccttgccattttggacaggaaactctc----tacataatggaattg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
10265455 |
ctgtcacacccccttttgtttgtgataatttgctgctgtagatgaagcttaaggccttgccattttggataggaaactctctacatacataatggaattg |
10265554 |
T |
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| Q |
209 |
tgttagtttttgtccattctaactaactaggagaaaactatgtataaccgaaccgacacattgaaga |
275 |
Q |
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| T |
10265555 |
tgttactttttgtccattctaactaactaggagaaaactatgtagaaccgaactgacacattgaaga |
10265621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 10273052 - 10273298
Alignment:
| Q |
13 |
ctaaataatacttcatctggactgacactatcggatttaaatgcattcatggcatgcttgaatcctggatttctgaacacatttgttgtggctgttcctg |
112 |
Q |
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||||||| |||||||||||||||||||||| |||||| ||||| | ||||| |||| || ||||||||| ||||||||||||| |||||||||||||| |
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| T |
10273052 |
ctaaatattacttcatctggactgacactaggggattttaatgcctgcatggtatgcctgtatcctggatgactgaacacatttgctgtggctgttcctg |
10273151 |
T |
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| Q |
113 |
ctgtcacacccccttttgtttgtgataatttgctgccgtagacgatgcttaaggccttgccattttggacaggaaactctctacataatggaattgtgtt |
212 |
Q |
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| T |
10273152 |
ctgtcacacccccttttgtttgtgataatttgctgctgtagatgaagcttaaggccttgccattttggataggaaactctctacataatgtaattgtgtt |
10273251 |
T |
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| Q |
213 |
agtttttgtccattctaactaactaggagaaaactatgtataaccga |
259 |
Q |
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| T |
10273252 |
agtttttgtccattctaactaactaggagaaaactatgtagaaccga |
10273298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 10243515 - 10243690
Alignment:
| Q |
58 |
ttcatggcatgcttgaatcctggatttctgaacacatttgttgtggctgttcctgctgtcacacccccttttgtttgtgataatttgctgccgtagacga |
157 |
Q |
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| T |
10243515 |
ttcattgcatgcttgtatcctggatttctgaatacattggctgtggctgttgctactgtcacaccccctttagcttgtgatagtttgctgctgtagatga |
10243614 |
T |
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| Q |
158 |
tgcttaaggccttgccattttggacaggaaactctctacataatggaattgtgttagtttttgtccattctaacta |
233 |
Q |
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| T |
10243615 |
agcttaaggccttgccattttggataggaaactctctgcataatggaattttgttagcttttgtaaattctaacta |
10243690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 10284355 - 10284514
Alignment:
| Q |
74 |
atcctggatttctgaacacatttgttgtggctgttcctgctgtcacacccccttttgtttgtgataatttgctgccgtagacgatgcttaaggccttgcc |
173 |
Q |
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||||||||||| |||| | |||||||||||||||| || ||| ||||| || |||||||||| | ||||| | ||||| | | ||||| |||| || |
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| T |
10284355 |
atcctggatttgtgaatagatttgttgtggctgttgctaatgttacaccattttctgtttgtgatgacttgctactgtagataaagtttaagccctttcc |
10284454 |
T |
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| Q |
174 |
attttggacaggaaactctctacataatggaattgtgttagtttttgtccattctaacta |
233 |
Q |
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| T |
10284455 |
attttggataggaaactctctacacaatggaattgtgttagtttttgtccattctaacta |
10284514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 35739289 - 35739322
Alignment:
| Q |
268 |
attgaagactattattagatctcatgtaagggta |
301 |
Q |
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| T |
35739289 |
attgaagactattattagatatcatgtaagggta |
35739322 |
T |
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