View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_high_75 (Length: 268)

Name: NF9005_high_75
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_high_75
NF9005_high_75
[»] chr8 (4 HSPs)
chr8 (1-268)||(10330858-10331121)
chr8 (161-203)||(7677424-7677466)
chr8 (172-204)||(26469339-26469371)
chr8 (172-204)||(40619215-40619247)
[»] chr3 (3 HSPs)
chr3 (161-204)||(53508122-53508165)
chr3 (164-204)||(20465114-20465154)
chr3 (172-204)||(52116155-52116187)
[»] chr1 (5 HSPs)
chr1 (161-204)||(15492195-15492238)
chr1 (169-202)||(24597469-24597502)
chr1 (161-205)||(5983742-5983786)
chr1 (161-204)||(31984085-31984128)
chr1 (161-204)||(36775861-36775904)
[»] chr2 (2 HSPs)
chr2 (172-204)||(16375872-16375904)
chr2 (161-204)||(42714650-42714693)
[»] chr7 (2 HSPs)
chr7 (161-204)||(5775117-5775160)
chr7 (164-204)||(5078539-5078579)
[»] chr5 (1 HSPs)
chr5 (161-204)||(19103618-19103661)
[»] chr4 (6 HSPs)
chr4 (161-204)||(37030185-37030228)
chr4 (161-203)||(10259040-10259082)
chr4 (171-204)||(33920983-33921016)
chr4 (161-197)||(9634596-9634632)
chr4 (161-197)||(9643302-9643338)
chr4 (172-204)||(52978757-52978789)
[»] chr6 (2 HSPs)
chr6 (164-204)||(1933842-1933882)
chr6 (51-131)||(32191964-32192044)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 10330858 - 10331121
Alignment:
Q  1 ttcatagattcaaacatttcagctaataaggcgtgtgtctataagacggtcctagttgtttatcgagagaaattctaattttttctaaatgctatttctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10330858 ttcatagattcaaacatttcagctaataaggcgtgtgtctataagacggtcctagttgtttatcgagagaaattctaattttttctaaatgctatttctc 10330957  T
Q  101 tttcattcatcaaagtggagtgattttaggttatatctgcacnnnnnnnnncttcttctgttctttcgatataaataaatgattttcacatatatcaagt 200  Q
    ||||||||||||||||||||||||||||||| |||||||||           || | || ||||||||||||||||||||||||||||||||||| || |    
T  10330958 tttcattcatcaaagtggagtgattttaggtcatatctgca----tctttttttttcctcttctttcgatataaataaatgattttcacatatattaaat 10331053  T
Q  201 ttttgtgattatgtcgtctatgctatgttcttcgatgtcttgtgtggtgttatttaatttcgtatctt 268  Q
    ||||||||||||||||||||   | ||||||||||||||||||| |||||| ||||||||| ||||||    
T  10331054 ttttgtgattatgtcgtctacattgtgttcttcgatgtcttgtgcggtgttgtttaatttcatatctt 10331121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 7677466 - 7677424
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagtttt 203  Q
    |||||||||| |||||||||  |||||||||||||||||||||    
T  7677466 ttctttcgatctaaataaattgttttcacatatatcaagtttt 7677424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 26469371 - 26469339
Alignment:
Q  172 taaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| |||||||||||||||||||||||||    
T  26469371 taaataagtgattttcacatatatcaagttttt 26469339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 40619247 - 40619215
Alignment:
Q  172 taaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| |||||||||||||||||||||||||    
T  40619247 taaataagtgattttcacatatatcaagttttt 40619215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 53508122 - 53508165
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  53508122 ttctttcaatataaataagtgattttcacatatatcaagttttt 53508165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 20465154 - 20465114
Alignment:
Q  164 tttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    |||| |||||||||| ||||||| |||||||||||||||||    
T  20465154 tttcaatataaataagtgattttaacatatatcaagttttt 20465114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 52116187 - 52116155
Alignment:
Q  172 taaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| |||||||||||||||||||||||||    
T  52116187 taaataagtgattttcacatatatcaagttttt 52116155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 15492195 - 15492238
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  15492195 ttctttcaatctaaataaatgattttcacatatatcaagttttt 15492238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 24597502 - 24597469
Alignment:
Q  169 atataaataaatgattttcacatatatcaagttt 202  Q
    ||||||||||||||||||||||||||||||||||    
T  24597502 atataaataaatgattttcacatatatcaagttt 24597469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 5983742 - 5983786
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagtttttg 205  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||    
T  5983742 ttctttcgatctaaataaatggttttcacatctatcaagtttttg 5983786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 31984085 - 31984128
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    |||||||||| ||||||| || ||||||||||||||||||||||    
T  31984085 ttctttcgatctaaataagtggttttcacatatatcaagttttt 31984128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 36775904 - 36775861
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| || ||||||||||||||||||||| |||||||||||    
T  36775904 ttctttcaatctaaataaatgattttcacatacatcaagttttt 36775861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 16375872 - 16375904
Alignment:
Q  172 taaataaatgattttcacatatatcaagttttt 204  Q
    |||||||||||||||||||||||||||||||||    
T  16375872 taaataaatgattttcacatatatcaagttttt 16375904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 42714650 - 42714693
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||    
T  42714650 ttctttcgatctaaataagtgatttttacatatatcaagttttt 42714693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 5775117 - 5775160
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||    
T  5775117 ttcttttgatataaataagtgatttccacatatatcaagttttt 5775160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 5078579 - 5078539
Alignment:
Q  164 tttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| ||||||| ||||||| |||||||||||||||||    
T  5078579 tttcgatctaaataagtgatttttacatatatcaagttttt 5078539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 19103661 - 19103618
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    |||||||||| ||||||| ||||||||||||| |||||||||||    
T  19103661 ttctttcgatctaaataagtgattttcacatacatcaagttttt 19103618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 37030185 - 37030228
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| || ||||||||||||||||||| |||||||||||||    
T  37030185 ttctttcaatttaaataaatgattttcacacatatcaagttttt 37030228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 10259082 - 10259040
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatcaagtttt 203  Q
    |||||||||| |||| ||||| |||||||||||||||||||||    
T  10259082 ttctttcgatctaaacaaatggttttcacatatatcaagtttt 10259040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 33920983 - 33921016
Alignment:
Q  171 ataaataaatgattttcacatatatcaagttttt 204  Q
    |||||||| |||||||||||||||||||||||||    
T  33920983 ataaataagtgattttcacatatatcaagttttt 33921016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 9634596 - 9634632
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatca 197  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  9634596 ttctttcgatctaaataagtgattttcacatatatca 9634632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 9643302 - 9643338
Alignment:
Q  161 ttctttcgatataaataaatgattttcacatatatca 197  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  9643302 ttctttcgatctaaataagtgattttcacatatatca 9643338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 52978757 - 52978789
Alignment:
Q  172 taaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| |||||||||||||||||||||||||    
T  52978757 taaataagtgattttcacatatatcaagttttt 52978789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 1933882 - 1933842
Alignment:
Q  164 tttcgatataaataaatgattttcacatatatcaagttttt 204  Q
    ||||||| ||||||| | |||||||||||||||||||||||    
T  1933882 tttcgatctaaataagttattttcacatatatcaagttttt 1933842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 32192044 - 32191964
Alignment:
Q  51 cctagttgtttatcgagagaaattctaattttttctaaatgctatttctctttcattcatcaaagtggagtgattttaggt 131  Q
    ||||||| ||||  |||||||| ||||||||| ||||| |  | ||||||||||||||||||| | || ||| ||||||||    
T  32192044 cctagttttttagagagagaaactctaattttgtctaagttttctttctctttcattcatcaaggaggggtggttttaggt 32191964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University