View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_high_8 (Length: 647)
Name: NF9005_high_8
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 10 - 624
Target Start/End: Original strand, 40103965 - 40104574
Alignment:
| Q |
10 |
aagcagagattttctgtcaaaattatgagaaattacccaaaaaggagactatgaggttttataaaagtaatctcttatatatcataaacaagagagtata |
109 |
Q |
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| T |
40103965 |
aagcagagattttctgtcaaaattatgacaaattacccaaaaaggagactatgaggttttataaaagtaatctcttatatatcataaacaaaagagtata |
40104064 |
T |
|
| Q |
110 |
aatcaaaactaaaattgaatcactaattggttgatatatttgtatggttgatttaaacttgtttactcatgttcataaggtcacaaatgtgacgaactag |
209 |
Q |
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| T |
40104065 |
aatcaaaactaaaattaaatcactaattggttgatatatttgtatggttgttttaaacttgtttactcatgttcataaggtcacaaatgtgacgaaccag |
40104164 |
T |
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| Q |
210 |
agtaggaatattctcgttcgttttaaagtgctatcttaccatgtcaactaacaccttgagatactgttaacttagaggcgattaatccatagctatcttg |
309 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
40104165 |
agtaggaatatt-----tcgttttaaagtgctatcttaccatgtcaactaacaccttgagatactgttaacttagaggcgactaatccatatcaatcttg |
40104259 |
T |
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| Q |
310 |
atatacatgtcccacatctcagcatggactacatcacaagaacaaatcctttatgcatatctctcaaacaagtaccattattatttcggaggagactccc |
409 |
Q |
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| T |
40104260 |
atatacatgtaccacatctcagcatggactacatcgcaagaaccaatccttcatgcatatctctcaaacaagtaccattattatttcggaggagactccc |
40104359 |
T |
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| Q |
410 |
ataacgtgaaaagtttaactaaatttttatgtacaccatcagaattgaacttgattcgccgcttccaaagatgcattgaatcaatgtataatatcattat |
509 |
Q |
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|| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40104360 |
attacgtgaaaattttaactaaatttgtatgtacaccatcagaattgaacttgattcgccgcttccaaagatgccttgaatcaatgtataatatcattat |
40104459 |
T |
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| Q |
510 |
atatgttgagtctatcaactcaacggtatttgtttgcttacggctatcaatctccacaaccatctttagaagactacttggagatatctttaaaaatact |
609 |
Q |
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| T |
40104460 |
atatgttgagtctatcaactctacggtgtttgtttgcttacggctatcaatctccacaaccatctttagaagactacttggaggtatctttaaaaatact |
40104559 |
T |
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| Q |
610 |
cttgttttcttcacg |
624 |
Q |
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| T |
40104560 |
cttgttttctccacg |
40104574 |
T |
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