View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_high_82 (Length: 250)
Name: NF9005_high_82
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_82 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 115880 - 116119
Alignment:
| Q |
11 |
cacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaagg |
110 |
Q |
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| T |
115880 |
cacagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaagg |
115979 |
T |
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| Q |
111 |
aaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctttcgt |
210 |
Q |
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| T |
115980 |
aaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctttcgt |
116079 |
T |
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| Q |
211 |
tgttatggtggataggtccaatagatatgattagaggtgt |
250 |
Q |
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| T |
116080 |
tgttatggtggataggtccaatagatatgattagaggtgt |
116119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 177901 - 177668
Alignment:
| Q |
17 |
atccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaact |
116 |
Q |
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| T |
177901 |
atccaacaatatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttctaggaaagct |
177802 |
T |
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| Q |
117 |
ttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctttcgttgttat |
216 |
Q |
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| T |
177801 |
ttgtagttaattaaatcatttttttcttctatgcgattccaaaaaaaatgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttat |
177702 |
T |
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| Q |
217 |
ggtggataggtccaatagatatgattagaggtgt |
250 |
Q |
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| T |
177701 |
ggtggataggtccaattgatatgagcagaggtgt |
177668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 250
Target Start/End: Complemental strand, 606512 - 606358
Alignment:
| Q |
96 |
tcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcattt |
195 |
Q |
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| T |
606512 |
tcttcttgttcaaggaaagttttgtagttcattaaatcacttttttggtctaggcgattccaaaagaaatgaaaatatctctgtttgtgttcttgcatat |
606413 |
T |
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| Q |
196 |
cctcaagtctttcgttgttatggtggataggtccaatagatatgattagaggtgt |
250 |
Q |
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| T |
606412 |
cctcatgtgttttgttgctatggtggataggtccaattgatatgagtagaggtgt |
606358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 10273 - 10502
Alignment:
| Q |
12 |
acagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaagga |
111 |
Q |
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| T |
10273 |
acagaatccaacagtatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaa |
10372 |
T |
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| Q |
112 |
aaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctt---tc |
208 |
Q |
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| T |
10373 |
attctttgtagttcatcaaatcatttttgctgtccaaacgattccagaaataatgaaaatacctatgtttgtattcttgcatttcctcaagttttttgtt |
10472 |
T |
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| Q |
209 |
gttgttatggtggataggtccaatagatat |
238 |
Q |
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| T |
10473 |
gttgttatggtggataggaccaatggatat |
10502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 23727 - 23956
Alignment:
| Q |
12 |
acagaatccaatagtatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaagga |
111 |
Q |
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| T |
23727 |
acagaatccaacagtatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaa |
23826 |
T |
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| Q |
112 |
aaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctt---tc |
208 |
Q |
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| T |
23827 |
attctttgtagttcatcaaatcatttttgctgtccaaacgattccagaaataatgaaaatacctatgtttgtattcttgcatttcctcaagttttttgtt |
23926 |
T |
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| Q |
209 |
gttgttatggtggataggtccaatagatat |
238 |
Q |
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| T |
23927 |
gttgttatggtggataggaccaatggatat |
23956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 37438553 - 37438640
Alignment:
| Q |
52 |
tgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
139 |
Q |
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| T |
37438553 |
tgatatttgagaatttcttttggtaacatcggcgtatattttgctcttcttgttcaacgaaggttttgcagttcattaaatcactttt |
37438640 |
T |
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