View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_high_90 (Length: 237)

Name: NF9005_high_90
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_high_90
NF9005_high_90
[»] chr8 (6 HSPs)
chr8 (1-223)||(116148-116370)
chr8 (7-95)||(606235-606323)
chr8 (13-97)||(177543-177627)
chr8 (156-207)||(1666960-1667011)
chr8 (165-207)||(41620395-41620437)
chr8 (174-207)||(1664316-1664349)
[»] chr1 (2 HSPs)
chr1 (174-207)||(4200162-4200195)
chr1 (162-214)||(35350542-35350594)
[»] chr4 (2 HSPs)
chr4 (154-206)||(23819003-23819055)
chr4 (156-202)||(15969818-15969864)
[»] scaffold0199 (1 HSPs)
scaffold0199 (174-207)||(6757-6790)
[»] chr7 (1 HSPs)
chr7 (174-207)||(5939017-5939050)
[»] chr3 (1 HSPs)
chr3 (158-207)||(16790192-16790241)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 116148 - 116370
Alignment:
Q  1 gtagctggaactttgtagatacaacattgaggccaatgggaaggctcaatattgtctgggatgttaattatttgttggatatgatcttcaacagaagatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  116148 gtagctggaactttgtagatacaacattgaggccaatgggaaggctcaatattgtctgggatgttaattatttgttggatatgatcttcaacagaagatg 116247  T
Q  101 ccatgaaatcttcttttcctgtagatcaaccagcagagtaagaccctgttggataattaagcatttatcttacaagtgtttatatataagttatttttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  116248 ccatgaaatcttcttttcctgtagatcaaccagcagagtaagaccctgttggataattaagcatttatcttacaagtgtttatatataagttatttttat 116347  T
Q  201 aacaaaatacaatatcatgttaa 223  Q
    |||||||||||||||||||||||    
T  116348 aacaaaatacaatatcatgttaa 116370  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 606323 - 606235
Alignment:
Q  7 ggaactttgtagatacaacattgaggccaatgggaaggctcaatattgtctgggatgttaattatttgttggatatgatcttcaacaga 95  Q
    ||||| |||||||||||||||||||||||| ||| |||||| ||||| || |||||||||||||||||||||||||||| |||||||||    
T  606323 ggaaccttgtagatacaacattgaggccaaaggggaggctctatattttcagggatgttaattatttgttggatatgatattcaacaga 606235  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 177627 - 177543
Alignment:
Q  13 ttgtagatacaacattgaggccaatgggaaggctcaatattgtctgggatgttaattatttgttggatatgatcttcaacagaag 97  Q
    ||||||||||||||||||||||||   | |||||| ||| | ||||||||||| ||||  |||||||| |||| |||| ||||||    
T  177627 ttgtagatacaacattgaggccaagttgcaggctctataatttctgggatgttgattacgtgttggatgtgatattcagcagaag 177543  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 1666960 - 1667011
Alignment:
Q  156 attaagcatttatcttacaagtgtttatatataagttatttttataacaaaa 207  Q
    ||||||| |||| | || ||||||||||||||||| ||||||||||||||||    
T  1666960 attaagcttttagcatataagtgtttatatataagctatttttataacaaaa 1667011  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 41620437 - 41620395
Alignment:
Q  165 ttatcttacaagtgtttatatataagttatttttataacaaaa 207  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||    
T  41620437 ttatcatacaagtgcttatatataagttatttttgtaacaaaa 41620395  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 1664316 - 1664349
Alignment:
Q  174 aagtgtttatatataagttatttttataacaaaa 207  Q
    ||||||||||||||||| ||||||||||||||||    
T  1664316 aagtgtttatatataagctatttttataacaaaa 1664349  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 4200162 - 4200195
Alignment:
Q  174 aagtgtttatatataagttatttttataacaaaa 207  Q
    ||||||||||||||||||||||||||||||||||    
T  4200162 aagtgtttatatataagttatttttataacaaaa 4200195  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 35350542 - 35350594
Alignment:
Q  162 catttatcttacaagtgtttatatataagttatttttataacaaaatacaata 214  Q
    |||||||| |||||||  |||| |||||| ||||| |||||||||||||||||    
T  35350542 catttatcatacaagttcttatttataagctatttctataacaaaatacaata 35350594  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 23819003 - 23819055
Alignment:
Q  154 taattaagcatttatcttacaagtgtttatatataagttatttttataacaaa 206  Q
    ||||| |||||||||| ||||||||||||| ||||||||||||  ||||||||    
T  23819003 taatttagcatttatcatacaagtgtttatgtataagttatttccataacaaa 23819055  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 15969818 - 15969864
Alignment:
Q  156 attaagcatttatcttacaagtgtttatatataagttatttttataa 202  Q
    ||||||| |||||  ||||||||||||| ||||||||||||||||||    
T  15969818 attaagcgtttatagtacaagtgtttatgtataagttatttttataa 15969864  T

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Target: scaffold0199 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 6757 - 6790
Alignment:
Q  174 aagtgtttatatataagttatttttataacaaaa 207  Q
    ||||||||||||||||| ||||||||||||||||    
T  6757 aagtgtttatatataagctatttttataacaaaa 6790  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 5939017 - 5939050
Alignment:
Q  174 aagtgtttatatataagttatttttataacaaaa 207  Q
    |||||||||| |||||||||||||||||||||||    
T  5939017 aagtgtttatgtataagttatttttataacaaaa 5939050  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 16790241 - 16790192
Alignment:
Q  158 taagcatttatcttacaagtgtttatatataagttatttttataacaaaa 207  Q
    ||||| |||||| || ||||| ||||||||||||||||| ||||||||||    
T  16790241 taagcgtttatcatataagtgcttatatataagttatttctataacaaaa 16790192  T

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