View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_high_95 (Length: 231)
Name: NF9005_high_95
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_high_95 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 18936761 - 18936599
Alignment:
| Q |
17 |
agagaattggaggtttctatagaactcaatgttaaataatggtgctacgaaatatgatgtaaaaaattaatatacctgaaaaaataaaggcaaggacgag |
116 |
Q |
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| T |
18936761 |
agagaattggaggtttctatagaactcaatgttaaataatggtgctacgaaatatgatgtaaaaaactaatatacctgaaaaaaaaaaggcaaggacgag |
18936662 |
T |
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| Q |
117 |
aatgggcatgaaggaaaacttagccatttcgaatagcttcaatatcaattgcagaaataagac |
179 |
Q |
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| T |
18936661 |
aatgggcatgaaggaaaacttagccatttcgaatagcttcaatatcaattgcagaaataagac |
18936599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 57 - 178
Target Start/End: Complemental strand, 18926532 - 18926411
Alignment:
| Q |
57 |
ggtgctacgaaatatgatgtaaaaaattaatatacctgaaaaaataaaggcaaggacgagaatgggcatgaaggaaaacttagccatttcgaatagcttc |
156 |
Q |
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| T |
18926532 |
ggtgctacgaaatatgatgtaaaaaattaatataccagaaaaaataaagacaaggacgagaacaggtatgaaggaaaacttagccatttcgaatagcttc |
18926433 |
T |
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| Q |
157 |
aatatcaattgcagaaataaga |
178 |
Q |
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| T |
18926432 |
aatatcaattgcagtaataaga |
18926411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 18936181 - 18936098
Alignment:
| Q |
96 |
aaaaataaaggcaaggacgagaatgggcatgaaggaaaacttagccatttcgaatagcttcaatatcaattgcagaaataagac |
179 |
Q |
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| T |
18936181 |
aaaaaaaaaggcaaggacgagaatgggcatgaaggaaaacttagccatttcgaatagcttcaatatcaattgcagaaataagac |
18936098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 18926629 - 18926593
Alignment:
| Q |
21 |
aattggaggtttctatagaactcaatgttaaataatg |
57 |
Q |
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| T |
18926629 |
aattggaggtttctatagaactcaacgttaaataatg |
18926593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 16536112 - 16536195
Alignment:
| Q |
78 |
aaaaattaatatacctgaaaaaataaaggcaaggacgagaatgggcatgaaggaaaacttagccatttcgaatagcttcaatat |
161 |
Q |
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| T |
16536112 |
aaaaattagtatacctgtaaaaattaaagcaaggatgataattggcatgaaggaaaatttagccattttaaatagcttcaatat |
16536195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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