View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_104 (Length: 347)
Name: NF9005_low_104
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 8534752 - 8534900
Alignment:
| Q |
177 |
gtgtccatgagaatgattggaagtaaaggtgatgcttgtgtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcgatct |
276 |
Q |
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| T |
8534752 |
gtgtccatgagaatgattggaagtgaaggtgatgcttgggtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcaatct |
8534851 |
T |
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| Q |
277 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgat |
325 |
Q |
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| T |
8534852 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgat |
8534900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 8599991 - 8600139
Alignment:
| Q |
177 |
gtgtccatgagaatgattggaagtaaaggtgatgcttgtgtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcgatct |
276 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8599991 |
gtgtccatgagaatgattggaagtgaaggtgatgcttgggtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcaatct |
8600090 |
T |
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| Q |
277 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgat |
325 |
Q |
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| T |
8600091 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgat |
8600139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 8613435 - 8613287
Alignment:
| Q |
177 |
gtgtccatgagaatgattggaagtaaaggtgatgcttgtgtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcgatct |
276 |
Q |
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| T |
8613435 |
gtgtccatgagaatgattggaagtgaaggtgatgcttgggtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcaatct |
8613336 |
T |
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| Q |
277 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgat |
325 |
Q |
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| T |
8613335 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgat |
8613287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 8534574 - 8534702
Alignment:
| Q |
5 |
gtgggtagataatactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctattcaac |
104 |
Q |
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| T |
8534574 |
gtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctactcaac |
8534673 |
T |
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| Q |
105 |
tcaggttctttcttcatcatttcatccag |
133 |
Q |
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| T |
8534674 |
tcaggttctttcttcatcatttcatccag |
8534702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 8599813 - 8599941
Alignment:
| Q |
5 |
gtgggtagataatactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctattcaac |
104 |
Q |
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| T |
8599813 |
gtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctactcaac |
8599912 |
T |
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| Q |
105 |
tcaggttctttcttcatcatttcatccag |
133 |
Q |
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| T |
8599913 |
tcaggttctttcttcatcatttcatccag |
8599941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 8613613 - 8613485
Alignment:
| Q |
5 |
gtgggtagataatactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctattcaac |
104 |
Q |
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| T |
8613613 |
gtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctactcaac |
8613514 |
T |
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| Q |
105 |
tcaggttctttcttcatcatttcatccag |
133 |
Q |
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| T |
8613513 |
tcaggttctttcttcatcatttcatccag |
8613485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 8548141 - 8548048
Alignment:
| Q |
232 |
gttgttgagtagtgaaagcaagaacaggtttggaatcagcgatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgat |
325 |
Q |
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| T |
8548141 |
gttgttgagtagtgaaagcaagaacaggtttggaatcagcaatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgat |
8548048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 14752233 - 14752292
Alignment:
| Q |
11 |
agataatactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtc |
70 |
Q |
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| T |
14752233 |
agatactactcctttgcttggtcctgttgttccagatgagtagagtagagtagctgtgtc |
14752292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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