View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_105 (Length: 337)
Name: NF9005_low_105
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_105 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 30343785 - 30343479
Alignment:
| Q |
14 |
aggagcagagaaatctatagaattgaaatcagcatcaagtgaaattgtcaaggaaatagtccatgatcaattgcacttaacaagattaaatgagcttgat |
113 |
Q |
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| T |
30343785 |
aggatcagagaaatctatagaagtgaaatcagcatcaagtgaaattgtcaaggaaatagtccatgatcaattgcacttaacaagattaaatgagcttgat |
30343686 |
T |
|
| Q |
114 |
tcactttctaagcagataaaggctcttgaatccatgatgggagaacaaagcaaagattttgacacggaatcacaaagattggattctgatgaagaaaatg |
213 |
Q |
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| T |
30343685 |
tcactttctaagcagataaaggctcttgaatccatgatgggagaacaaagcaaagattttgacacggaatcacaaagattggattctgatgaagaaaatg |
30343586 |
T |
|
| Q |
214 |
ttacaagagagtttcttcatatgcttgaggatcaaaagtctagattatacaaacttaaccaatctgaaattccacctttgcatcttgaagaacatgatga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30343585 |
ttacaagagagtttcttcatatgcttgaggatcaaaagtctagattatacaaacttaaccaatctgaaattccacctttgcatcttgaagaacatgatga |
30343486 |
T |
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| Q |
314 |
taattct |
320 |
Q |
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||||||| |
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| T |
30343485 |
taattct |
30343479 |
T |
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