View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_110 (Length: 334)
Name: NF9005_low_110
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_110 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 43453810 - 43454119
Alignment:
| Q |
18 |
cttataaacatattttatgccttatctcattcaatgttggactcttaacacctttgggattagaaatttggagcatgacccaagtgccccaaaagcaatg |
117 |
Q |
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| T |
43453810 |
cttataaacatattttatgccttatctcattcaatgttggactcttaacacctttgggattagaaatttggagcatgacccaagtgccccaaaagcaatg |
43453909 |
T |
|
| Q |
118 |
acttgatgatgtacaattgattgaaagtgtaannnnnnnnnnacacttgtacgaatgaaatctttttaatcattagcaggattacacttacagaagcaca |
217 |
Q |
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| T |
43453910 |
acttgatgatgtgcaattgattgaaagtgtaattttttttttacacttgtacgaattaaatctttttaatcattagcaggattacacttacagcagcaca |
43454009 |
T |
|
| Q |
218 |
atttactttatattatcgaacttgttaagcctctagtcaaaaccatatcttttaggatgcaatcaggcagacaaattaggatgaataaggatggattaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43454010 |
atttactttatattatcgaacttgttaagcctctagtcaaaaccatatcttttaggatgcaatcgggcagacaaattaggatgaataaggatggattaaa |
43454109 |
T |
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| Q |
318 |
gcgagataca |
327 |
Q |
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|||||||||| |
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| T |
43454110 |
gcgagataca |
43454119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 2037234 - 2037287
Alignment:
| Q |
16 |
cacttataaacatat-tttatgccttatctcattcaatgttggactcttaacac |
68 |
Q |
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| T |
2037234 |
cacttataaacacatctttatgccatatctcattcaatgtgggattcttaacac |
2037287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 44181220 - 44181168
Alignment:
| Q |
16 |
cacttataaacatatttt-atgccttatctcattcaatgttggactcttaaca |
67 |
Q |
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| T |
44181220 |
cacttataaacatattttcatgccttatctcagccaatgcgggactcttaaca |
44181168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 44185565 - 44185513
Alignment:
| Q |
16 |
cacttataaacatatttt-atgccttatctcattcaatgttggactcttaaca |
67 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| |||||||||||| |
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| T |
44185565 |
cacttataaacatattttcatgccttatctcagccaatgcgggactcttaaca |
44185513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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