View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_113 (Length: 331)

Name: NF9005_low_113
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_113
NF9005_low_113
[»] chr7 (4 HSPs)
chr7 (11-313)||(5178993-5179295)
chr7 (61-114)||(22845041-22845094)
chr7 (66-114)||(42233252-42233300)
chr7 (65-114)||(21068983-21069032)
[»] chr8 (6 HSPs)
chr8 (11-313)||(5185301-5185605)
chr8 (11-313)||(6231811-6232117)
chr8 (11-313)||(1795406-1795705)
chr8 (227-311)||(5179352-5179435)
chr8 (65-114)||(21112654-21112703)
chr8 (116-161)||(5058903-5058948)
[»] chr2 (6 HSPs)
chr2 (63-114)||(27510633-27510684)
chr2 (65-114)||(27193733-27193782)
chr2 (65-114)||(27843547-27843596)
chr2 (67-114)||(3643125-3643172)
chr2 (66-114)||(35610915-35610963)
chr2 (65-106)||(24267988-24268029)
[»] chr5 (8 HSPs)
chr5 (61-114)||(3691231-3691284)
chr5 (61-114)||(3875503-3875556)
chr5 (61-114)||(17870566-17870619)
chr5 (65-114)||(10026238-10026287)
chr5 (65-114)||(25541703-25541752)
chr5 (65-106)||(24628878-24628919)
chr5 (65-106)||(30345561-30345602)
chr5 (66-114)||(14191720-14191768)
[»] scaffold0356 (2 HSPs)
scaffold0356 (63-114)||(15958-16009)
scaffold0356 (63-114)||(16877-16928)
[»] scaffold0003 (1 HSPs)
scaffold0003 (63-114)||(184068-184119)
[»] chr6 (3 HSPs)
chr6 (63-114)||(18857795-18857846)
chr6 (61-114)||(30882563-30882616)
chr6 (65-114)||(15334557-15334606)
[»] chr4 (2 HSPs)
chr4 (63-114)||(14146459-14146510)
chr4 (65-114)||(55558033-55558082)
[»] chr3 (5 HSPs)
chr3 (63-114)||(11369898-11369949)
chr3 (65-114)||(10001668-10001717)
chr3 (65-114)||(27275656-27275705)
chr3 (65-114)||(10111860-10111909)
chr3 (65-114)||(10245545-10245594)
[»] chr1 (4 HSPs)
chr1 (63-114)||(2330426-2330477)
chr1 (63-114)||(48774293-48774344)
chr1 (61-114)||(36208474-36208527)
chr1 (65-106)||(52501831-52501872)
[»] scaffold1139 (1 HSPs)
scaffold1139 (63-114)||(2274-2325)
[»] scaffold0262 (1 HSPs)
scaffold0262 (65-114)||(20264-20313)
[»] scaffold0225 (1 HSPs)
scaffold0225 (65-114)||(13204-13253)
[»] scaffold0118 (2 HSPs)
scaffold0118 (65-114)||(27629-27678)
scaffold0118 (65-114)||(24437-24486)
[»] scaffold0029 (1 HSPs)
scaffold0029 (65-114)||(141174-141222)
[»] scaffold0002 (1 HSPs)
scaffold0002 (65-114)||(318641-318689)
[»] scaffold0017 (1 HSPs)
scaffold0017 (66-114)||(187804-187852)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 5178993 - 5179295
Alignment:
Q  11 agtttggtgttacctcttaaatgcatgatgccgcatttgttttgatacactatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttc 110  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178993 agtttgatgttacctcttaaatgcatgatgccacatttgttttgatacactatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttc 5179092  T
Q  111 tttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcgcatcttccaaacaaggacctt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5179093 tttattattggctttacttattagtcgttctttattatcttccaatgattgataactacttattatgattcacatttcgcatcttccaaacaaggacctt 5179192  T
Q  211 cttgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttga-ttttttctacaaaagctg 309  Q
    | |||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5179193 c-tgctgatttccattttgtcagaacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgatttttttctacaaaagctg 5179291  T
Q  310 catg 313  Q
    ||||    
T  5179292 catg 5179295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 22845041 - 22845094
Alignment:
Q  61 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  22845041 tatggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 22845094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 42233252 - 42233300
Alignment:
Q  66 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  42233252 aaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 42233300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 21069032 - 21068983
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| |||||  ||||||||||||||||||||||||||| |||||||    
T  21069032 gaaaatgttgaatgatatcgtagagttagtaactcttagttttttcttta 21068983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 5185301 - 5185605
Alignment:
Q  11 agtttggtgttacctcttaaatgcatgatgccgcatttgttttgata--cactatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgt 108  Q
    |||||| ||||||||||||||||||  ||| | ||||||||||||||  |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  5185301 agtttgatgttacctcttaaatgcacaatgacacatttgttttgatatacactatggaaaatgctgaacggtatcgtagagttagtaactcttagtttgt 5185400  T
Q  109 tctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcgcatcttccaaacaaggacc 208  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||    
T  5185401 tctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttattgtgattcgcattttgcatcttccaagcaaggacc 5185500  T
Q  209 ttcttgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgattttttctacaaaagct 308  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5185501 ttcttgctgatttccattttaccataacatttttggatataactcatttccaacttctcaatgcagtgatccctttaagttgattttttctacaaaagct 5185600  T
Q  309 gcatg 313  Q
    |||||    
T  5185601 gcatg 5185605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 6231811 - 6232117
Alignment:
Q  11 agtttggtgttacctcttaaatgcatgatgccgcatttgttttgata---cactatggaaaatgctgaatagtatcgtagagttagtaactctta--gtt 105  Q
    |||||| | ||||||||||||||||||||| | |||||||| |||||   ||||||||||||| ||||   ||||||||||||||||| ||||||  |||    
T  6231811 agtttgatattacctcttaaatgcatgatgacacatttgttatgatataacactatggaaaattctgagcggtatcgtagagttagtagctcttatagtt 6231910  T
Q  106 tgttctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcgcatcttccaaacaagg 205  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  6231911 tgttctttattattggctttacttatttgtagttatttattatcttccaatgattgataactagttattgtgattcgcatttcgcatcttccaagcaagg 6232010  T
Q  206 accttcttgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgattttttctacaaaa 305  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  6232011 accttct-gctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcagtgatcccttcaagttgattttttctacaaaa 6232109  T
Q  306 gctgcatg 313  Q
    ||||||||    
T  6232110 gctgcatg 6232117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 1795705 - 1795406
Alignment:
Q  11 agtttggtgttacctcttaaatgcatgatgccgcatttgttttgata--cactatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgt 108  Q
    |||||| ||||||||||||||||||||||| | | ||| ||||||||  ||||| |||||||| ||||  ||||||||||| ||||||||||||||||||    
T  1795705 agtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgtagagatagtaactcttagtttgt 1795606  T
Q  109 tctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcgcatcttccaaacaaggacc 208  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||| ||||||||    
T  1795605 tctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcatttcgcttcttccaagcaaggacc 1795506  T
Q  209 ttcttgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgattttttctacaaaagct 308  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||  |   ||||||||||||||||||||||||||||||||||||| ||    
T  1795505 ttc-tgctgatttccatttcaccataacatttttggatataactcatctc--ac--catgatgcaatgatccctttaagttgattttttctacaaaaact 1795411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 5179352 - 5179435
Alignment:
Q  227 tcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgattttttctacaaaagctgca 311  Q
    ||||||||||||||| ||| || ||||||||||| ||||||  || ||||||||| ||||||||||||| |||||||||||||||    
T  5179352 tcaccataacattttcggacatcactcatttccagcttctcagtgtaatgatccc-ttaagttgattttgtctacaaaagctgca 5179435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 21112703 - 21112654
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| ||||| |||||||||||||||||||||| |||||||    
T  21112703 gaaaatgttgaatggtatcatagagttagtaactcttagttttttcttta 21112654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 5058948 - 5058903
Alignment:
Q  116 tattggctttacttattagtcgttctttattatcttccaatgattg 161  Q
    |||| ||| |||||||| || |||||||||||||||||||||||||    
T  5058948 tattagctatacttatttgtagttctttattatcttccaatgattg 5058903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 27510633 - 27510684
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27510633 tggaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27510684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 27193733 - 27193782
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27193733 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27193782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 27843547 - 27843596
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27843547 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27843596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 3643125 - 3643172
Alignment:
Q  67 aaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||| || ||||||||||||||||||||||||||| |||||    
T  3643125 aaatgctgaatggtgtcgtagagttagtaactcttagtttgtccttta 3643172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 35610915 - 35610963
Alignment:
Q  66 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||||  ||||||| |||||||||||||||||||||| ||||    
T  35610915 aaaatgctgaatgctatcgtacagttagtaactcttagtttgtttttta 35610963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 24268029 - 24267988
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 106  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  24268029 gaaaatgttgaatggtatcatagagttagtaactcttagttt 24267988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 3691231 - 3691284
Alignment:
Q  61 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  3691231 tatggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3691284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 3875556 - 3875503
Alignment:
Q  61 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  3875556 tatggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3875503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 17870619 - 17870566
Alignment:
Q  61 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  17870619 tatggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 17870566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 10026238 - 10026287
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  10026238 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10026287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 25541752 - 25541703
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  25541752 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 25541703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 24628919 - 24628878
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 106  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||    
T  24628919 gaaaatgttgaatggtatcgtagagttagtaactcttggttt 24628878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 30345602 - 30345561
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 106  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||    
T  30345602 gaaaatgttgaatggtatcgttgagttagtaactcttagttt 30345561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 14191768 - 14191720
Alignment:
Q  66 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    |||||| |||||  ||||||| ||||||| |||||||||||||||||||    
T  14191768 aaaatgttgaatgctatcgtacagttagtgactcttagtttgttcttta 14191720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 16009 - 15958
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  16009 tggaaaatgcttaatggtatcgtagagttagtaactcttagtttgttcttta 15958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 16928 - 16877
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  16928 tggaaaatgctgaatggtgtcgtagagttagtaactcttagtttgtccttta 16877  T

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Target: scaffold0003 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 184068 - 184119
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  184068 tggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 184119  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 18857795 - 18857846
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  18857795 tggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 18857846  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 30882563 - 30882616
Alignment:
Q  61 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  30882563 tatggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 30882616  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 15334557 - 15334606
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| ||||| ||||||||||||| |||||||| |||||||    
T  15334557 gaaaatgttgaatggtatcatagagttagtaacccttagttttttcttta 15334606  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 14146510 - 14146459
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  14146510 tggaaaatgctgaatggtatcggagagttagtaactcttagtttgttcttta 14146459  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 55558082 - 55558033
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  55558082 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 55558033  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 11369898 - 11369949
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  11369898 tggaaaatgctgaatggtatcgtggagttagtaactcttagtttgttcttta 11369949  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 10001668 - 10001717
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  10001668 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10001717  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 27275656 - 27275705
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  27275656 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27275705  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 10111860 - 10111909
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||||||| ||||||||||||| |||||||    
T  10111860 gaaaatgttgaatggtatcgtagagttattaactcttagttttttcttta 10111909  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 10245545 - 10245594
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||| ||||||||||||||||| |||||||    
T  10245545 gaaaatgttgaatggtatcgtagatttagtaactcttagttttttcttta 10245594  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 2330426 - 2330477
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  2330426 tggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 2330477  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 48774344 - 48774293
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  48774344 tggaaaatgtttaatggtatcgtagagttagtaactcttagtttgttcttta 48774293  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 36208474 - 36208527
Alignment:
Q  61 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    |||| ||||| |||||  ||||| ||||||||||||||||||||||||||||||    
T  36208474 tatgaaaaattctgaacggtatcatagagttagtaactcttagtttgttcttta 36208527  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 52501831 - 52501872
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 106  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||    
T  52501831 gaaaatgttgaatggtatcgtagagttagtaactcttggttt 52501872  T

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Target: scaffold1139 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 2274 - 2325
Alignment:
Q  63 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  2274 tggaaaatgttgaatgatatcgtagagttagtaactcttagtttgttcttta 2325  T

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Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 20264 - 20313
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  20264 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 20313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 13253 - 13204
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  13253 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 13204  T

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Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 27678 - 27629
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  27678 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 24486 - 24437
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| |||| ||||||||||||||||||||||| |||||||    
T  24486 gaaaatgttgaatggtattgtagagttagtaactcttagttttttcttta 24437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 141222 - 141174
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  141222 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 141174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 318689 - 318641
Alignment:
Q  65 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  318689 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 318641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 187804 - 187852
Alignment:
Q  66 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 114  Q
    |||||| ||||| ||||||||||||||| |||||||||||| |||||||    
T  187804 aaaatgttgaatggtatcgtagagttagcaactcttagttttttcttta 187852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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