View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_117 (Length: 322)
Name: NF9005_low_117
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_117 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 27447604 - 27447304
Alignment:
| Q |
16 |
catcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27447604 |
catcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacac |
27447505 |
T |
|
| Q |
116 |
cagccaaacaagactgtccttttctctcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27447504 |
cagccaaacaagactgtccttttctctcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggact |
27447405 |
T |
|
| Q |
216 |
aacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||| |
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| T |
27447404 |
cacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtc |
27447305 |
T |
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| Q |
316 |
c |
316 |
Q |
| |
|
| |
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| T |
27447304 |
c |
27447304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 142 - 316
Target Start/End: Complemental strand, 27430201 - 27430027
Alignment:
| Q |
142 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
241 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430201 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
27430102 |
T |
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| Q |
242 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430101 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 27430357 - 27430229
Alignment:
| Q |
16 |
catcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacac |
115 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||| | |||| |||| ||| || ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
27430357 |
catcatacttgtagaatcttgcaaagctctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacac |
27430258 |
T |
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| Q |
116 |
cagccaaacaagactgtccttttctctca |
144 |
Q |
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||||||||||||| || |||||||||||| |
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| T |
27430257 |
cagccaaacaagattgcccttttctctca |
27430229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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